Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2157 ATGGTCTTCTCAACTCCCTTTCTTCATGAAGCTGTCCCCTTCTTTTCTAGAAAGAGGTTCAAAGTGTCAGGTCTTGCACATCCAGATATAGATGCAGGAATTTCCGGTGATATACCCTTGCGAGATGTAGAAAGATGTACTGGTGACATTCCCTCTTGCTGCAATTTTGATGATAAAGTTGATCCTGATTCTGAAATGGAGATGACCTGTCCATCAAATGTTAACAGTGGTGATGTTCCTGTTTGTTCTACTCCTACCACTACAGGTAGTATTTCACATCTGGACCAGAGTTTCACTGGCTATGTGCAACCACCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAACAAGGGCAAATGTGCGGTCCTTATATTAAGGAGCAGTTATATGAGGGCCTAACTTCTGGTTTCTTGCCATTAGAACTTCCTGTGTATCCTATGATCAATGGCACGATAATGAACCCTGTACCATTGAATTATTTCAAGCAGTTTCCTGACCATGTTTCCACCGGGTTTGCATATCTTTCTATGAGTACCTTAAGCACAAGGATGCCTACGCATTGCCCCTCCTCTTCTTGTAAGGATATGGCAGTTTACGGGCACGACAGATCTTCTGAACATGCTGCTCCTCTGGCTGCGAACACCGATTCACATACACTTGTCAATTACAGCATTAAGGAATCCAATCAATCGGATTCAAACTCTGAGTCCTTCAACAGTATAATATCTTGTCAGATGTTACGTGAAGATTCTTGTTGGCTTTATGAGGATGAAAAGGGAATGAAACATGGGCCACATTCTTTTTCGGAATTGGTTTCCTGGCACCACCATGGATATCTTAAAGATTCAACCGCGATCTCCCATTCTGACAATAAGTATGGCACATTTGTGTTACTATCTGTTGTAGATGCATTGAAAGGAGATATATCTGGAACCATGTGTAGATCAGGTTCCACAAGCAATGAAGTTGGTAATGTGGTGAACTTAACTTGTGAAATATCTGAAAATATTTCGTCCCAGTTGTACATGGGCGTCATGAAAGCTGCCCGCAGAGTTGTGCTAGATGGGATTATTGGTGATATCATTGCAGAATTTTTTACTGAAAAGAAACACCAGAGGCTTAAGCTTGAATCAACTGATCGTAATTCTGAGACTTGCAAGTTAGACAAAAAAATGTGTAAGTTTTCCGTGGAGATTAGTCAAGATACTGCCATTCCAAGTGAGCTTGCATCTTCCCATATTTTGGATGATCAGTCCTGTCATGAAATTTCGGGACCATCTTCAACAAGTGTTAAGTCAGTTGGAAGTGTTGAAAATTTTTGGTGGTCATATGCTGTTGTTCGTAAAGTACTTTTTAATTATTGCTTACAAGTCATGTGGAATGCAGTGTTTTTTGACCCTTTAACAGAGTACTTATTTTCCTGGAGGAAGAGGAAACTTTGGTCTCAACCTAAGCCTCAGCCATCTGTTAATGGATGCAAAGATTATGGTGAAAAGATTGAACAGTATGAAGTTCCAGAGAGAGATTATCATCCTCAGTTAGATTCGTCTCCTAGTAGTCTCAAAAGTGGAAACATACTCGAAGGTCAAATGATTTCACACACTTACAACTCTAAAGATTTGACATGCATTATCGAAGGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGATGTCTTTAGCTGATTACATTCGAAGTTTTGTTGAAAAGGAAGTGAACACATTAATTCCTTCCCCAGAGGAAGACAAATTGAGTCAGGTTGTTATTAGTGACAGTGGCACTTGTAAAACATCTGTGAAGGATATTCTTAATGACAAGTCTATGGATCCTGTAAGAGATGGGCATTCCTTTTGCATGTCCGCATCTGGAAACCATATGTCTAATATATTCTCAAAAGCATTTAAAGAATTGTGTGGACATTTGGATGATGTGGTTGATGAAGAGGAGATTGGTAACCTACCACTACCACCTGGATTTGAAAAGAAATGTCCTACAATTTTCCCACAATTCAATTCAAAATTTCGACCTTCAAGGTTATTTGAATGTAATCCTAAGATTACAGAATATGTTGCCACTGCGCTGTGCCGTCAGAAGCTGCACGATGAAGTTCTAGAAGACTGCAAGTCTTCACTTCTTGATTCTGCATTGAATCAAATTTTTATATCATTGTGTCCCAAGAAGAAGCAATTCCGTTCTTATGGTCGTAACAAGAAAGAGAAAGCATTATGTGCAAGCAAGGAACATTCAAATGATGCTACTTCTGGACTAGGAAGAGTGAAGGAAGGAACAAAAAATTCTTCTGGAGTTCCTATGGTGATTGAAAAATATACATCCTACAGCAAGAAGCGGTCAAAGAAAGAGTTGCATTCCTCCCAATGTGTAACAGATGATTATTTGAGGCCAGGAAAGCCGCCTGTGGCTAAGTTAAGGAAATCTAGAGATGTGGATGAGACTGCAGAAGTCAAAATAACGTCTCTTAAACCTGGAAAGGCTAGGATGATTAAAGGGAAAAAGGATACACATTCTAATGGCAGGTCTTCTTCTGTCAATGTCAACAGTAACTCCCACAGTGATCAGTTGTCCTCGAAGAATAAAACTAGTCAGAAAGTATTGAAGTTTTCAAGTACAGTTCAAAATGATGTTATGGATGTTGTAAAGTCTAAAGAAAAGAAGCTTTCAACGTCAACAGATAATAGCGTTAGCACAAAGAAGGTGATTAGAAGTGATGGTTGTGATGGAGCAACCATTCAAGGGAAGACCACTGGTTCCAGAGAGATACTTAATGCATCAAAGAAAGTTTCAAAATTAAAAAGGAAGCATCAAATAGATGGTATGACATCCTCACATCCTGCTAAGGTTTTGAAAATTTCAAATAGTGCGAATGTGGGAGCTAGCAAACAGGTTACTGTGGCAAGGGGGAATTCTGCTAAATCGAAGCAATTGAATTTATGTCCTCGATCTGATGGATGTGCTAGGGCTTCTATTGATGGATGGGAATGGCATAAATGGTCTCGAAGTGCCAGTCCTGCATATAGAGCACGTGTCAGGGGTCTTCCGCGTGTACAAAACAAGTGCATGGATACTGAAAATAATTTATCTCAGTTGTCAAATGGTAAGGGTATTTCTGCAAGAACTAATAGGGTGAAATTGCGTAACCTTGTTGCTGCTGCTGAGGGTGCAGATCTTTTGAAAGTGGCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGCAAGATTCATGACTGGGGTCTTATTGCCATGGAGCCAATAGAGGCAGAGGACTTTGTCATTGAATATATTGGAGAACTAATTCGTCCTCAGATATCTGATATACGAGAGCGTCAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTACGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTTTTATATGCAAAACGGCATATAGCTTCTGGAGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGCCGTGGATCACTTAATTAG 3639 0.3974 MVFSTPFLHEAVPFFSRKRFKVSGLAHPDIDAGISGDIPLRDVERCTGDIPSCCNFDDKVDPDSEMEMTCPSNVNSGDVPVCSTPTTTGSISHLDQSFTGYVQPPAFVSGWMYVNEQGQMCGPYIKEQLYEGLTSGFLPLELPVYPMINGTIMNPVPLNYFKQFPDHVSTGFAYLSMSTLSTRMPTHCPSSSCKDMAVYGHDRSSEHAAPLAANTDSHTLVNYSIKESNQSDSNSESFNSIISCQMLREDSCWLYEDEKGMKHGPHSFSELVSWHHHGYLKDSTAISHSDNKYGTFVLLSVVDALKGDISGTMCRSGSTSNEVGNVVNLTCEISENISSQLYMGVMKAARRVVLDGIIGDIIAEFFTEKKHQRLKLESTDRNSETCKLDKKMCKFSVEISQDTAIPSELASSHILDDQSCHEISGPSSTSVKSVGSVENFWWSYAVVRKVLFNYCLQVMWNAVFFDPLTEYLFSWRKRKLWSQPKPQPSVNGCKDYGEKIEQYEVPERDYHPQLDSSPSSLKSGNILEGQMISHTYNSKDLTCIIEGVENELHFSSKMSLADYIRSFVEKEVNTLIPSPEEDKLSQVVISDSGTCKTSVKDILNDKSMDPVRDGHSFCMSASGNHMSNIFSKAFKELCGHLDDVVDEEEIGNLPLPPGFEKKCPTIFPQFNSKFRPSRLFECNPKITEYVATALCRQKLHDEVLEDCKSSLLDSALNQIFISLCPKKKQFRSYGRNKKEKALCASKEHSNDATSGLGRVKEGTKNSSGVPMVIEKYTSYSKKRSKKELHSSQCVTDDYLRPGKPPVAKLRKSRDVDETAEVKITSLKPGKARMIKGKKDTHSNGRSSSVNVNSNSHSDQLSSKNKTSQKVLKFSSTVQNDVMDVVKSKEKKLSTSTDNSVSTKKVIRSDGCDGATIQGKTTGSREILNASKKVSKLKRKHQIDGMTSSHPAKVLKISNSANVGASKQVTVARGNSAKSKQLNLCPRSDGCARASIDGWEWHKWSRSASPAYRARVRGLPRVQNKCMDTENNLSQLSNGKGISARTNRVKLRNLVAAAEGADLLKVAQLKARKKRLRFQRSKIHDWGLIAMEPIEAEDFVIEYIGELIRPQISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFLYAKRHIASGEEITYNYKFPLEEKKIPCNCGSKKCRGSLN* 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2157 1212 Gene3D - 99 174 IPR035445 -
Lja6g2157 1212 Gene3D - 239 323 IPR035445 -
Lja6g2157 1212 MobiDBLite consensus disorder prediction 843 868 - -
Lja6g2157 1212 CDD SET_SETD1 1061 1208 - -
Lja6g2157 1212 MobiDBLite consensus disorder prediction 803 823 - -
Lja6g2157 1212 Gene3D SET domain 1009 1212 IPR046341 -
Lja6g2157 1212 MobiDBLite consensus disorder prediction 780 868 - -
Lja6g2157 1212 SUPERFAMILY SET domain 1069 1209 IPR046341 -
Lja6g2157 1212 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 52 1212 - -
Lja6g2157 1212 ProSiteProfiles SET domain profile. 1073 1190 IPR001214 GO:0005515
Lja6g2157 1212 Pfam SET domain 1085 1189 IPR001214 GO:0005515
Lja6g2157 1212 SUPERFAMILY GYF domain 246 300 IPR035445 -
Lja6g2157 1212 SMART set_7 1073 1196 IPR001214 GO:0005515
Lja6g2157 1212 ProSiteProfiles GYF domain profile. 250 306 IPR003169 GO:0005515
Lja6g2157 1212 MobiDBLite consensus disorder prediction 741 767 - -
Lja6g2157 1212 ProSiteProfiles Post-SET domain profile. 1196 1212 IPR003616 -
Lja6g2157 1212 SMART PostSET_3 1196 1212 IPR003616 -
Lja6g2157 1212 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 52 1212 IPR044570 GO:0042800|GO:0051568
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2157 Lja-Chr6 50589638 50601762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2157 1072 1212 C2H2 Transcription Factor Family AT2G23740 38.037 1.48e-19 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja6g2157 SET 2.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2157 - - gmx:100805708 1667.9