Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2143 ATGGCAATGAAGTATATTCGGAGCAACAGCTTCAAGAGGCTATTCTCCTTTGGAAGACGCAGTTTTGGAGGAGAAAACGATGATAGCAGCTTGGTGGTTCCTCCTTATGAAGAACACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTGTTCCATGCCACCAATGGCTTCAGCTCAGAAAACATGGTTGGAAAAGGAGGGTATGCAGAGGTTTACAAGGGAAGACTAGAAAGTGGTGATGAAATTGCAGTGAAGAGGCTCACAAGAACTTGCAGGGATGAGAGGAAGGAGAAGGAGTTTCTGACAGAGATTGGTACAATAGGCCATGTTTGCCATTCCAATGTTATGCCTCTTTTGGGTTGTTGTATTGACAATGGACTTTACCTTGTTTTTGAGCTGTCCACTGTTGGCTCAGTTGCTTCTCTTATTCATGATGAGAAAATGGCTCCTCTTGATTGGAAAACAAGGTACAAGATAGTTCTTGGGACAGCACGTGGTCTCCACTACTTGCACAAAGGCTGCCAGAGGAGGATAATCCATAGGGACATCAAAGCATCAAACATTCTTTTGACAGAAGATTTTGAACCACAGATATCCGATTTTGGACTAGCAAAGTGGCTTCCATCTCAGTGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTATATGCATGGAGTTGTGGATGAAAAGACAGATGTATTTGCCTTTGGAGTGTTCTTGTTAGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTCACCAAAGCTTGCACACCTGGGCTAAACCAATATTGAGCAAATGGGAGATAGAAAAGTTGGTGGATCCAAGGCTTGAAGGGTGTTATGATGTGACACAGTTTAATAGAGTTGCCTTTGCTGCTTCGTTGTGCATCCGTGCATCTTCAACTTGGAGACCTACCATGAGTGAGGTACTAGAGGTAATGGAAGAAGGGGAGATGGATAAAGAGAGATGGAAGATGCCAAAGGAAGAAGAAGAAGATCAGCAAGGAGAGGAATTTTGGGGTTTTGAGGATCTGGAATATGAATATGACAGTTCATTTTCAATGTCCCTTCCTGACTCCACTGGAAGTACTTAG 1134 0.4383 MAMKYIRSNSFKRLFSFGRRSFGGENDDSSLVVPPYEEHPPRPSWKCFSYEELFHATNGFSSENMVGKGGYAEVYKGRLESGDEIAVKRLTRTCRDERKEKEFLTEIGTIGHVCHSNVMPLLGCCIDNGLYLVFELSTVGSVASLIHDEKMAPLDWKTRYKIVLGTARGLHYLHKGCQRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHTWAKPILSKWEIEKLVDPRLEGCYDVTQFNRVAFAASLCIRASSTWRPTMSEVLEVMEEGEMDKERWKMPKEEEEDQQGEEFWGFEDLEYEYDSSFSMSLPDSTGST* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2143 377 Coils Coil 87 107 - -
Lja6g2143 377 Gene3D Transferase(Phosphotransferase) domain 1 138 352 - -
Lja6g2143 377 SUPERFAMILY Protein kinase-like (PK-like) 37 327 IPR011009 -
Lja6g2143 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Lja6g2143 377 ProSiteProfiles Protein kinase domain profile. 60 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2143 377 Gene3D Phosphorylase Kinase; domain 1 36 136 - -
Lja6g2143 377 PANTHER OS08G0249100 PROTEIN 18 358 - -
Lja6g2143 377 PANTHER OS04G0654600 PROTEIN 18 358 - -
Lja6g2143 377 Pfam Protein tyrosine and serine/threonine kinase 63 268 IPR001245 GO:0004672|GO:0006468
Lja6g2143 377 ProSitePatterns Protein kinases ATP-binding region signature. 66 88 IPR017441 GO:0005524
Lja6g2143 377 SMART serkin_6 60 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2143 Lja-Chr6 50316313 50319789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2143 46 348 Receptor kinase-like Gene Family AT1G60800 42.444 2.13e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja6g2143 PK_Tyr_Ser-Thr 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2143 - - gmx:100804983 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1656 4 15575284 15579719 Lja6g2143 6 50316313 50319789 PCT