Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2140 ATGAGTTTTCGATTTTCTCCCCCTTCCTACTACTACAGTTCCTCTAATGATTTAGATACACAGGCTCAAAACACTTTTGACAAGTTTGATCAGAGTGTTGATTCCACCATGAAATGGGCAGTAGCAGGATCTGTTGTTTATGGAGTGGTGGTAATAATAGCAATTATAGCAATAGCATATGCAATTATTGAGTGCTTGAAGAAGGCAGGAACTGTGATTCCAGCTTACACTCAGCTTCCAACCACAGAGAACGATCATAAAGCTTCAAAGTCACTTCCATCCCCCAGCAAAATAGAAGTGGTAATACCACCAGATTCCATAGTTCCTGGTTCAAAAGCTGAGTTTGCAACCATGGAAAGATTCCTGAGCAACATCAACAGAGAGAAACCAATCAGGTTCTCACCTGAGCAACTTGATGGAGTTACAAAGAACTACTCAACCATATTGGGTTCTGGTGCTTTTGGAGTAGTCTTCAAAGGAGAATTGCCAAATGGAGAACTTGTAGCAGTCAAAGTTCTCAACTGTTTGGATATGGGAATGGAAGAGCAATTCAAAGCAGAAGTTGGAACCATTGGAAGAACTTACCATATCAATCTAGTTAGACTTTATGGTTTCTGCTTCCACCATGATACAAGAGCTCTTGTTTATGAGTGTGTGGAAAATGGATCTCTTGACAAGTACTTATTTGGCAGCCAGAACAGGAACATTGAGCTGGGGAAGCTACATCACATTGCAATTGGAACAGCAAAGGGACTTGCTTATTTACATGAGGAATGTCAACATAGAATAATTCATTATGATATCAAACCAGAGAATGTTCTTCTTGACATGAAATTAGAACCAAAGATAGCAGATTTCGGCCTCGCGAAGCTCCGCAACAGGGAAAGTAACACTACAATCAACACACACTTTAGAGGAACCAGGGGGTATGCTGCACCAGAAATGTGGAAGGCTTATCCGGTGACTTACAAGTGTGATGTTTATAGTTTTGGTATTCTTCTTTTTGAAATTGTAGGGAGGAGAAGGCACTTTGATTCTACCTACACAGAATCACAGCAATGGTTTCCAAAGTGGACATGGGAGATGTTTAAGAATAATGAATTAGCTGTAATGCTTGCACTTTGTGGAACTGAAGAGAAAGACAATGAGAAAGCTGAGAGAATGTTAAAGGTGGCTCTATGGTGTGTTCAGTATTCACCAGAAGATAGGCCTCTTATGAGTACTGTGGTGAAGATGTTAGAGGGTGAAATAGAAATTTCTCCACCCCCATTTCCTTTCAAAAACATGGTTTCATGGAAAGCAAACATGACTCCGGATGGAAGCACTGCAGATTCAGATGCTACTCCATCATCATGGAAGACAGATCCTTTGCCAGAACCTGGTTCTAGAACCATGGACAATACATTTCAGATCGAAAAAACTACTTGA 1428 0.4055 MSFRFSPPSYYYSSSNDLDTQAQNTFDKFDQSVDSTMKWAVAGSVVYGVVVIIAIIAIAYAIIECLKKAGTVIPAYTQLPTTENDHKASKSLPSPSKIEVVIPPDSIVPGSKAEFATMERFLSNINREKPIRFSPEQLDGVTKNYSTILGSGAFGVVFKGELPNGELVAVKVLNCLDMGMEEQFKAEVGTIGRTYHINLVRLYGFCFHHDTRALVYECVENGSLDKYLFGSQNRNIELGKLHHIAIGTAKGLAYLHEECQHRIIHYDIKPENVLLDMKLEPKIADFGLAKLRNRESNTTINTHFRGTRGYAAPEMWKAYPVTYKCDVYSFGILLFEIVGRRRHFDSTYTESQQWFPKWTWEMFKNNELAVMLALCGTEEKDNEKAERMLKVALWCVQYSPEDRPLMSTVVKMLEGEIEISPPPFPFKNMVSWKANMTPDGSTADSDATPSSWKTDPLPEPGSRTMDNTFQIEKTT* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2140 475 Gene3D Transferase(Phosphotransferase) domain 1 219 420 - -
Lja6g2140 475 ProSiteProfiles Protein kinase domain profile. 143 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2140 475 Gene3D Phosphorylase Kinase; domain 1 116 218 - -
Lja6g2140 475 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Lja6g2140 475 MobiDBLite consensus disorder prediction 435 475 - -
Lja6g2140 475 Pfam Protein kinase domain 147 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2140 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Lja6g2140 475 SMART serkin_6 143 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2140 475 SUPERFAMILY Protein kinase-like (PK-like) 126 414 IPR011009 -
Lja6g2140 475 PANTHER RUST RESISTANCE KINASE LR10-RELATED 113 433 IPR045874 GO:0004672
Lja6g2140 475 PANTHER OSJNBB0022F16.11 PROTEIN 113 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2140 Lja-Chr6 50301405 50303582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2140 132 426 Receptor kinase-like Gene Family AT5G38280 41.584 7.71e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lja6g2140 Pkinase 8.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2140 - - gmx:100820269 684.871