Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2139 ATGTCAGATACCACGTTTGGATTCAATTTTACCTTAGCCAGTGTCCCTACTTCTCCTATAACACTTTCTTCTAATAGAGGTTTAGGCTCTGATGGAATAATCACTCTAGCTTTTGTTATGATGTTCCTTCCCTTTTTGGCTTTATGTTGCATTAAAAAAATGAATCAGAATGATAGCACTTCAGAGCAAAAAATTCTGAACCTCACTGTGGATAAATTTCTGATCGAAATGGAAAGAGAGAAGCCAATCAGGTTTGCCAGTGAGCAGCTAAAGACTGCAACTGGTAACTACTCTAACTTGCTTGGTTCAGGAGGGTTTGGAGAAGTATATAAAGGAAATCTTATCAATCAAACCACTGTGGCTGTGAAGGTTCTGCGTGGGAGTTCAGTAGACAAGAAAATTGAGCAGCAATTCATGGCAGAAGTGGGTACAATTGGTAGAACTCATCATTTAAACCTTGTCCGGCTATACGGCTTTTGCTTTGAAAAAAACTTGATAGCACTGGTTTATGAGTACATGGTGAATGGCTCCCTTGACAGGTTTCTGTTTCAGGAGAACAAGAGCTTAGGATATGAAAAGCTTCATGAGATTGCAGTTGGGACAGCTAGAGGCATTGCATACTTGCATGAAGAGTGCCAACAGAGGATAATTCACTATGACATAAAACCAGGAAACATTCTCTTGGACAGGAACTTCAATCCCAAAGTTGCTGATTTTGGTTTGGCTAAGTTGTGTAACAGGGAAAATACTCACATAACCATGACTGGAGGAAGGGGGACTCCTGGTTATGCCGCTCCTGAACTTTGGATGCCATTTCATGTAACTCATAAGTGTGATGTTTACAGCTTTGGCATGCTGTTATTTGAAATCATAGGTAGGAGAAGAAACCTTGACATTGAACTTCCTGAGAGCCAGGAGTGGTTTCCAATCTTGGTTTGGAAGAAGTTTGATGCTGAAGAACTTGGGGAGTTAATGACAGTCTGTGGGGTAGATGAAGAAAATAAGGAGATAGCAGAAAGAATGGTAAAGGTAGCTCTGTTGTGTGTTCAGTACAGGCCAGAATCAAGGCCTATAATGAGTGTTGTGGTCAAAATGTTGGAAGGTTCTGATGAAATTCCTAAACCTTCGAACCCATTTCAGCACTTGATGAATGGGTCTTTGACTGCTAATCCAGTCCAAGGGTCACAGACTTATACAACAACTGTTTCTTCCAGCTCTTCTGTTTTGGTAAGTGACACCAACCTATGTGCTACTCCTGTTATGAGGAAGTATGAGATTGAATTAGCCTCTAGTATATGA 1299 0.4072 MSDTTFGFNFTLASVPTSPITLSSNRGLGSDGIITLAFVMMFLPFLALCCIKKMNQNDSTSEQKILNLTVDKFLIEMEREKPIRFASEQLKTATGNYSNLLGSGGFGEVYKGNLINQTTVAVKVLRGSSVDKKIEQQFMAEVGTIGRTHHLNLVRLYGFCFEKNLIALVYEYMVNGSLDRFLFQENKSLGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFHVTHKCDVYSFGMLLFEIIGRRRNLDIELPESQEWFPILVWKKFDAEELGELMTVCGVDEENKEIAERMVKVALLCVQYRPESRPIMSVVVKMLEGSDEIPKPSNPFQHLMNGSLTANPVQGSQTYTTTVSSSSSVLVSDTNLCATPVMRKYEIELASSI* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2139 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Lja6g2139 432 ProSitePatterns Protein kinases ATP-binding region signature. 101 123 IPR017441 GO:0005524
Lja6g2139 432 SMART serkin_6 95 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2139 432 SUPERFAMILY Protein kinase-like (PK-like) 79 367 IPR011009 -
Lja6g2139 432 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 429 IPR045874 GO:0004672
Lja6g2139 432 ProSiteProfiles Protein kinase domain profile. 95 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2139 432 Gene3D Phosphorylase Kinase; domain 1 68 172 - -
Lja6g2139 432 Pfam Protein tyrosine and serine/threonine kinase 99 366 IPR001245 GO:0004672|GO:0006468
Lja6g2139 432 Gene3D Transferase(Phosphotransferase) domain 1 173 378 - -
Lja6g2139 432 PANTHER PUTATIVE-RELATED 30 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2139 Lja-Chr6 50299727 50301399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2139 84 379 Receptor kinase-like Gene Family AT5G38280 43.421 1.01e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lja6g2139 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2139 - - gmx:100803355 597.43