Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2138 ATGATTTTCATTCTTCTGATTTTGTATTGCATTAAAGGAGCTAATCTGAAAGACAGCAGTTCAGAGCAAAAAATTCTGACCCTCACCATGGATAAATTTCTGAACGAAATGGAAAGAGAGAAACCAATCAGGTTTACCAGTGAGCAGCTAAGGACTGCAACTGGTAACTACTCAAACTTTCTGGGGTCAGGAGGGTTTGGAGAAGTATATAAAGGAAATCTTATAGATGAAACCACTTTGGCTGTGAAGGTTCTACGTGGGAGTTCTGACAAGAAAATTGAGCAGCAGTTTATGGCGGAAGTGAGCACAATTGGTAGAACTCATCATATCAATCTAGTTCGCCTCTATGGATTTTGTTTCGAAAATAGCTTGGTGGCACTGGTTTATGAGTACATGGTGAATGGCTCTCTTGATAGGTTTCTGTTTCAGGAAAACATGACCTTAGGATATGATAAGCTCCATGAGATTGCTGTTGGGACAGCAAGGGGCATTGCTTACTTGCATGAAGAGTGCCAACAGAGGATAATCCACTATGATATAAAACCAGGAAACATTCTCTTGGACAGGAACTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGTAACAGGGAAAATACTCACATAACCATGACTGGAGGAAGAGGTACTCCTGGTTATGCTGCTCCTGAACTTTGGATGCCATTTCCTGTTACTCACAAGTGTGATGTTTACAGTTTTGGCATTCTGTTATTTGAAATTATAGGTAGGAGAAGAAACCTTGATGTTAAACTGTCTGAGAGCCAGGAGTGGTTTCCAATCTGGGCTTGGAAAAAATTTGATGCTGGACAACTTGGGGAGCTAATGATAGCGTGTGGGATAGAAGAGAAAAATAAGGAGATAGCAGAAAGAATCGTTAAGGTAGCTCTGTCATGTGTTCAATATAGGCCAGAAGCAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCCGATGAAATTCCCAAGCCTTTGAACCCATTTCAGCACTTTATGGATGGGACTTTGTCTGCTAATGCTTTCCAAGTGTCACAGACTCATGCAACAACTGTTTCTTCCAGCTCTTCTGTTTTGGTAAGTGACACCAACATCCTATGTGCTACTCCTGTTATGAGGAAGTGCGAGATTGATTTATCCTCTAGTAGGTGA 1179 0.4105 MIFILLILYCIKGANLKDSSSEQKILTLTMDKFLNEMEREKPIRFTSEQLRTATGNYSNFLGSGGFGEVYKGNLIDETTLAVKVLRGSSDKKIEQQFMAEVSTIGRTHHINLVRLYGFCFENSLVALVYEYMVNGSLDRFLFQENMTLGYDKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGILLFEIIGRRRNLDVKLSESQEWFPIWAWKKFDAGQLGELMIACGIEEKNKEIAERIVKVALSCVQYRPEARPIMSVVVKMLEGSDEIPKPLNPFQHFMDGTLSANAFQVSQTHATTVSSSSSVLVSDTNILCATPVMRKCEIDLSSSR* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2138 392 SUPERFAMILY Protein kinase-like (PK-like) 37 326 IPR011009 -
Lja6g2138 392 ProSitePatterns Protein kinases ATP-binding region signature. 61 83 IPR017441 GO:0005524
Lja6g2138 392 ProSiteProfiles Protein kinase domain profile. 55 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2138 392 Pfam Protein tyrosine and serine/threonine kinase 59 325 IPR001245 GO:0004672|GO:0006468
Lja6g2138 392 SMART serkin_6 55 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2138 392 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 388 IPR045874 GO:0004672
Lja6g2138 392 Gene3D Transferase(Phosphotransferase) domain 1 132 334 - -
Lja6g2138 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lja6g2138 392 Gene3D Phosphorylase Kinase; domain 1 29 131 - -
Lja6g2138 392 PANTHER PUTATIVE-RELATED 4 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2138 Lja-Chr6 50282182 50283438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2138 44 338 Receptor kinase-like Gene Family AT5G38280 41.776 3.10e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lja6g2138 PK_Tyr_Ser-Thr 9.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2138 - - gmx:100816921 585.104