Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2136 ATGATTATTTTCTTTATCAATGACAAGAAAATTTTGCATATAAGTTTAACTACTTTGCCTCTTCCTTCACTTTGTTCCTCACTTTCACAGTTTCACTATAGAAATTTGCTTTCTTATCTTTGTCTAATGTCAGACTCGTCAAACTCGGGTGCTGTTGCAGCAGCAGTTGTATTCATCATTGTCGGGGTGGCGGCAAAGGTAGCTATTTTAATTTGTGTGTGCAGGAAAAGACATCAGAGTGGTGGTGGTGGAACAGTTATTCCAGACTCACAATTTCTGACCCTCACTATGGATAAATTTCTGAATGACATGGAAAGGGAGAAGCCAATCAGGTTCAGCGGTCAGCAACTAAGGATTGCAACTGATAACTACTCCAACTTGTTGGGTTCAGGAGGTTTTGGAGCAGTTTACAAGGGGATTTTCAGCAACGGGACCATAGTAGCGGTGAAGGTTCTCCGTGGAAGCTCTGCAGACAAGAGAATTGAGGAGCAATTCATGGCAGAAGTGGGAACAATTGGAAGAGTTCATCATTTCAACCTAGTTCGCCTCTATGGATTTTGCTTTGAAAGAAACTTGATAGCACTGGTTTATGAGTACATGGGGAATGGCTCTCTTGACAGGTTTCTGTTTCAGGAAAACAAGAGCAAAATAAGTGTGATTAACTTGCTTCATGAGATTGCAGTTGGGACAGCAAGGGGCATTGCTTACTTGCATGAAGAGTGCCAGCAGAGGATAATCCACTATGACATAAAACCAGGAAACATTCTCTTGGACAGGAACTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGACAATACTCACATCACCATGACCGGAGGAAGGGGGACTCCAGGTTACGCTGCTCCTGAGCTTTGGGCGCCATTTTCTGTAACTCACAAGTGTGATGTTTACAGCTTCGGCATGCTGTTATTTGAAATTATAGGTAGGAGAAGAAACCGTGATGCTAAACTTTCTGAGAGCCAGGAGTGGTTTCCAATGTGGGCTTGGAAAAAATTTGATGCTGGAGAACTTGGGGAGTTAATGATAGTGTGTGGGATAGAGGAGCAAAATAAGGATATAGCAGAAAGAATGGTTAAGGTAGCTCTGTCATGTGTTCAGTATAGGCCAGAAGTAAGGCCTATGATGAGTGTTGTGGTGAAAATGTTAGAAGGTTCAGATGAAATTCCAAAGCCTTTGAATCCATTTCAGTACTTGATGAATGGGGGGAGTTTGGGTGCTCATCCAGTCCAAGTGTCACAGACTTATACAACAACTATTTCTTCAGGGTCTTCTGTTTTGGTAAGCGACACCAACATCCTATGCGCTACTCCTGTTATGAGCAAGTATGAGATTGAATTAGCTACTAGCAAGTGA 1392 0.4239 MIIFFINDKKILHISLTTLPLPSLCSSLSQFHYRNLLSYLCLMSDSSNSGAVAAAVVFIIVGVAAKVAILICVCRKRHQSGGGGTVIPDSQFLTLTMDKFLNDMEREKPIRFSGQQLRIATDNYSNLLGSGGFGAVYKGIFSNGTIVAVKVLRGSSADKRIEEQFMAEVGTIGRVHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRFLFQENKSKISVINLLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWAPFSVTHKCDVYSFGMLLFEIIGRRRNRDAKLSESQEWFPMWAWKKFDAGELGELMIVCGIEEQNKDIAERMVKVALSCVQYRPEVRPMMSVVVKMLEGSDEIPKPLNPFQYLMNGGSLGAHPVQVSQTYTTTISSGSSVLVSDTNILCATPVMSKYEIELATSK* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2136 463 ProSiteProfiles Protein kinase domain profile. 122 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2136 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Lja6g2136 463 SMART serkin_6 122 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2136 463 Gene3D Transferase(Phosphotransferase) domain 1 200 403 - -
Lja6g2136 463 PANTHER RUST RESISTANCE KINASE LR10-RELATED 46 461 IPR045874 GO:0004672
Lja6g2136 463 Gene3D Phosphorylase Kinase; domain 1 97 199 - -
Lja6g2136 463 SUPERFAMILY Protein kinase-like (PK-like) 105 396 IPR011009 -
Lja6g2136 463 Pfam Protein tyrosine and serine/threonine kinase 126 395 IPR001245 GO:0004672|GO:0006468
Lja6g2136 463 PANTHER PUTATIVE-RELATED 46 461 - -
Lja6g2136 463 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2136 Lja-Chr6 50274404 50276036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2136 111 410 Receptor kinase-like Gene Family AT5G38280 42.345 2.78e-75 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lja6g2136 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2136 - - gmx:100816921 647.121