Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2134 ATGGGACGTGCAAAAGTAACTTTGAAACACATCCAAAATGAGAGAGCTCGTAAAGTAGCTTTCAATCAAAGAAGAAAGGGACTAATAAAGAAAGTATCCGATTTCTCAATCTTGTGTGAAGCTAAAGCATGCTTGATTGTGTATGATGCTGATGGCAATGGTGAACCTGTGACTTTTCCTGAAGATCCTGCAATAGTACACTCCATCATTGAAAAGTATGAGACAAAGAAGAATAATAAGAATGATAAACCACCTCCTAAGATATTTGATGTGGAAGACTTTTTTGACAATAGGAATGGGATGGTTGAAGCTGAGATTACCAAAATTCAGAAAGAGATTCTGAACATCAAGTATCCAACTAATGATCCAAGTCTCAATAGCATGACAATGCAGCAGAAATTATTCATGATTGCTAAGTTGGATGCTAAGATTGAAGCATGTAATGTTAGGATTAACATGCTCAAGAACAAAAGTCAAACATCACATCCTACCCAACTCAATTTGGTGCAGCAAAACATCTCTCAAGACCAACAAGTCAATTTGGATTCAACAAATCAAGCTGCTGATGAACCTGTGGCCAGGGATAAACTAGGGGAGCTTGTGGGTTGGACTGGTTAA 618 0.3786 MGRAKVTLKHIQNERARKVAFNQRRKGLIKKVSDFSILCEAKACLIVYDADGNGEPVTFPEDPAIVHSIIEKYETKKNNKNDKPPPKIFDVEDFFDNRNGMVEAEITKIQKEILNIKYPTNDPSLNSMTMQQKLFMIAKLDAKIEACNVRINMLKNKSQTSHPTQLNLVQQNISQDQQVNLDSTNQAADEPVARDKLGELVGWTG* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2134 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 59 IPR002100 GO:0003677|GO:0046983
Lja6g2134 205 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Lja6g2134 205 PANTHER PROTEIN, PUTATIVE-RELATED 3 180 - -
Lja6g2134 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja6g2134 205 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Lja6g2134 205 CDD MADS_SRF_like 2 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja6g2134 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja6g2134 205 PANTHER MADS BOX PROTEIN 3 180 - -
Lja6g2134 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja6g2134 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja6g2134 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja6g2134 205 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2134 Lja-Chr6 50255126 50255743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2134 1 181 Type I MADS-box Gene Family AT5G55690 28.495 9.94e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja6g2134 SRF-TF 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2134 - - lja:Lj6g3v1368650.1 209.149