Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2133 ATGGAGTGGGACAGCAATTCCGATTACAGCGGCGACGACGACGACGCCTCCTCCTCTTTCCTCCTAAACGACGACGTCGGACCCATCCCTTTCCCTGTCCTCCAAACCGCGCCCTGCGGATTCGTCGTCACCGACGCTCTTGAGCATGACCATCCTATCATCTACGTCAACGCCGTTTTCGAGATGCTCACTGGCTACCGCGCCGAAGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCGTTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGTCTTGAGGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGGACTCCACTTATGAACAGATTGAGGCTGACACCTATATATGGAGATGATGATGAGATAATTCATGTCATTGGAATCCAGCTCTTCACAGAGGCCAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATAAAGGAATCTGTTAAATCATCAGATGGGTTTCATTCTTTCCTGTCCACATTGCATCCTCTTCCAGCCGGGGACCGGAATGTGACACGTGGAGTTTGTGGGATATTGCAATTGAGTGAAGAAGTATTGTGTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAATTGGTTCGGTCTCTAGGCGATTATATGAGCTAACAAAAAATGAAGATCTTTGGAGAATGGTATGCCAAAATGCATGGGGCAGTGAAACAACACGTGTTTTAGAGACTGTTCCTGGTGCAAAGAGACTTGGATGGGGTCGGCTGGCAAGGGAATTGACCACACTTGAAGCAGCAGCTTGGAGAAAACTGACTGTTGGAGGTGGTGTTGAACCCTCACGCTGTAACTTTAGTGCTTGTGCAGTTGGTAACAGAGTTGTCCTATTTGGTGGTGAAGGAGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTACTAATCCTGAGTGGCAACATGTTCAGGTGAGCTCTCCTCCCCCTGGCCGGTGGGGCCACACAATTTCTTGTGTCAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAAGACAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCGGGATTAGCACCTCCGCTTCCAAGGTCATGGCATAGCTCCTGCACACTTGATGGTACTAAATTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTGCTTGATATGTCGATGGAGAAACCTATCTGGAGAGAGATACCAGTTACATGGACTCCACCTTCCCGTCTGGGCCACACACTATCTGTTTATGGTGGTCGAAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGCCCCCTGCGATTCCGCTCCAGTGATGTATTTACGATGGATTTAAGTGAGGAGGAGCCATGTTGGAGATGTGTAACGGGAAGTGGAATGCCTGGTGCTGGAAATCCAGGGGGCATAGCACCTCCTCCTAGACTTGATCATGTGGCTGTTAGCCTTCCAGGAGGGAGAATTCTTATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTATTCATACTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCACGATTTGCTTGGGGACATAGTACATGCGTCGTTGGAGGGACAAGAGCTATTGTTCTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCCTGGCAAGTTCTGCCATCTAG 1836 0.4842 MEWDSNSDYSGDDDDASSSFLLNDDVGPIPFPVLQTAPCGFVVTDALEHDHPIIYVNAVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGVEFQGELLNFRKDGTPLMNRLRLTPIYGDDDEIIHVIGIQLFTEANIDLGPVPGSTIKESVKSSDGFHSFLSTLHPLPAGDRNVTRGVCGILQLSEEVLCLKILARLTPRDIASIGSVSRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSTNPEWQHVQVSSPPPGRWGHTISCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMEKPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLFILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2133 611 ProSiteProfiles PAS repeat profile. 33 108 IPR000014 -
Lja6g2133 611 Gene3D - 272 498 IPR015915 GO:0005515
Lja6g2133 611 Gene3D - 499 610 IPR015915 GO:0005515
Lja6g2133 611 PANTHER ADAGIO PROTEIN 1-LIKE 1 610 - -
Lja6g2133 611 SUPERFAMILY F-box domain 189 260 IPR036047 GO:0005515
Lja6g2133 611 Pfam Galactose oxidase, central domain 295 345 - -
Lja6g2133 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 610 - -
Lja6g2133 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Lja6g2133 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Lja6g2133 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 37 148 IPR035965 -
Lja6g2133 611 Pfam PAS domain 38 147 IPR000014 -
Lja6g2133 611 Gene3D PAS domain 31 159 - -
Lja6g2133 611 Pfam Galactose oxidase, central domain 357 406 - -
Lja6g2133 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Lja6g2133 611 TIGRFAM sensory_box: PAS domain S-box protein 49 147 IPR000014 -
Lja6g2133 611 SUPERFAMILY Galactose oxidase, central domain 282 596 IPR011043 -
Lja6g2133 611 CDD PAS 37 147 IPR000014 -
Lja6g2133 611 Gene3D - 195 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2133 Lja-Chr6 50247399 50253368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2133 33 242 AGC Kinase Gene Family AT5G58140 26.068 2.77e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2133 K12115 - gmx:100802828 1108.98