Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2118 ATGAACCCCATGACAAAATATTGTGCTGTGTTTATCACCTTGGTTCTTGTTTTGGCCAGAGAAGTAAAGGTGCAAGGAAATACATGTTCAGAAGCTTTGGATCAATGTGATTCAATGGAAAGTTGTGATCAGAAGTGTAAAGGCCGACACAATGGCAGACGAGGGTCGTGTAACTTAGGCTTGTGCACATGTTCTTACAGTTGTGGGCCTCCAGGCCCAAAAATACCCTCAAATTTATGCACCGCAGGTCTTGGATTGTGCAGCACAAAATGCGGTGATAGCTGCTGCAATTCAATATGTGCTAGCAAGTACAATCAAGGTGTTGGATTTTGTTATACCAGTGGTCCATCTATCAACTTATGTACCTGCCAATATCCATGCGCATTGTAG 390 0.4308 MNPMTKYCAVFITLVLVLAREVKVQGNTCSEALDQCDSMESCDQKCKGRHNGRRGSCNLGLCTCSYSCGPPGPKIPSNLCTAGLGLCSTKCGDSCCNSICASKYNQGVGFCYTSGPSINLCTCQYPCAL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2118 129 PANTHER DEFENSIN-LIKE PROTEIN 183 2 127 IPR039641 -
Lja6g2118 129 Pfam S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) 80 127 IPR010851 -
Lja6g2118 129 PANTHER DEFENSIN-LIKE PROTEIN 183 2 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2118 Lja-Chr6 50009934 50010446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2118 9 127 Plant Defensins Gene Families AT5G38330 36.800 2.42e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2118 - - gsj:114386687 147.517