Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2109 ATGAGCGACTTAAGGGTGAGTGGTAAGGTGAAGTCGTTCAATGATCAAAAGGGTTTCGGGTTCATCATCCCTGATGATGGAGGCGATGATATCTTCGTTCACCAGTCCGAGATCAAATCCGAAGGGTTTCGGAGCCTCGGTGAAGGAGAACTCGTTGAGTTTATCGTCAATTTCAATCCTGATGGTCGCGCTAAGGCCATTGATGTGACTGGTCCCAATCGGGCACTAGTTAAGTGTACCCGCAACATTGGTCGAGGAGGCGGTGGATATGGTGGTGGTGGAAGAGGAGGCAGTGGTTATGGTGGAGGCGACAGCGGGTATGGCGATGGATACGGTGGCGGTGGAAGAGGAGGCAGTGGTTATGGTGGAGGCGGCGGCAGGTATGGCGGTGGATACGGTGGCGGTGGAAGAGGAGGCAGCGGGTATGGCGGTGGCTACGGTGGCGGTGGTTATGGTGGATACGGTGGCGGTGGAAGAGGAGGCGGTGGTTATGGTGGAGGCGGCAGGTATGGCGGTGGATACGGTGGCCGTGGAAGAGGAGGCGGTGGTTATGGTGGAGGCGGCAGGTATGGCGGTGGATACGGTGGCGGTGGAAGAGGAGGCGGTGGTTACGGTGGAGGCAACGAGTATGGTGGAGGCGTTGGATACGATGGAAGGGGAGGTGGTGGCGTGTGTTACAACTGTGGTCACTTGGCTCGCAATTGCGGCAGCGGTGGAGGCAGGTACAGAGGCGACGGTGGAAGCTGCTACACTTGTGGTAATTCTGGGCATTTCGCGAGAGACTGCCCTTCTAATGCCCGTTGA 804 0.5759 MSDLRVSGKVKSFNDQKGFGFIIPDDGGDDIFVHQSEIKSEGFRSLGEGELVEFIVNFNPDGRAKAIDVTGPNRALVKCTRNIGRGGGGYGGGGRGGSGYGGGDSGYGDGYGGGGRGGSGYGGGGGRYGGGYGGGGRGGSGYGGGYGGGGYGGYGGGGRGGGGYGGGGRYGGGYGGRGRGGGGYGGGGRYGGGYGGGGRGGGGYGGGNEYGGGVGYDGRGGGGVCYNCGHLARNCGSGGGRYRGDGGSCYTCGNSGHFARDCPSNAR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2109 267 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lja6g2109 267 Gene3D - 2 82 IPR012340 -
Lja6g2109 267 SUPERFAMILY Retrovirus zinc finger-like domains 215 265 IPR036875 GO:0003676|GO:0008270
Lja6g2109 267 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lja6g2109 267 Pfam Zinc knuckle 248 264 IPR001878 GO:0003676|GO:0008270
Lja6g2109 267 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lja6g2109 267 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lja6g2109 267 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lja6g2109 267 Gene3D - 214 267 - -
Lja6g2109 267 PANTHER COLD SHOCK DOMAIN PROTEIN 2 178 265 - -
Lja6g2109 267 SMART csp_8 7 72 IPR011129 GO:0003676
Lja6g2109 267 PANTHER COLD SHOCK PROTEIN 1 4 170 - -
Lja6g2109 267 SMART c2hcfinal6 224 237 IPR001878 GO:0003676|GO:0008270
Lja6g2109 267 SMART c2hcfinal6 248 264 IPR001878 GO:0003676|GO:0008270
Lja6g2109 267 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lja6g2109 267 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 170 - -
Lja6g2109 267 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lja6g2109 267 ProSiteProfiles Zinc finger CCHC-type profile. 249 264 IPR001878 GO:0003676|GO:0008270
Lja6g2109 267 PANTHER COLD SHOCK PROTEIN 1 178 265 - -
Lja6g2109 267 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2109 Lja-Chr6 49710755 49711558 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lja6g2109 CSD 3.1e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2109 - - gmx:100795875 107.071