Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2108 ATGGCTTCAAAAACCAAAATTTGCATTATTCAAGTGGTTTTCATAGCTTTTCTCATAGCTGATGTTGTTCGATGCGATGACAATGTGCCAGTTCCTGCAGATAAGGCTCAAATTGACAAATGGTTCAGTGAAAATGTTGGACCCTTAGCTCAGAGGAAGGCTACCCTGGACCCTGCACTAGTGGCGGCGGAGGATGGTACTCCTAAGGTTGTGAAGGTTAAGCCAGATGGAAGCGGCGATTTCAAGACGATCACAGAGGCCATTAACAGCATTCCTATTGCGAACGCCAAGCGTGTGATTGTGTACATTGCAGGCGGAAATTATAATGAGAAAGTGAAAATTGATAGAGGAAAGCCATTTATTACCTTTTATGGAGAACCAGGGAACATGCCAAACTTGACATATGGGGGCACTGCAAAACAATATGGCACTCTTGACAGTGCTACATTGATCGTTGAATCGGATTACTTTGTGGCCACTAACATCATCTTCTCGAACTCTGCACCAAAACCTGATGGAAAGCAGGGCCAACAAGCCGTAGCATTGAGAATTACTGGTGACAAGGCAGCATTTTATAATTGCAAGTTTTTTGGATTCCAGGACACGGTGTGTGATGATAGGAATAAGCATTTTTTCAAAGATTGCTTAATTCAAGGCACCGTGGACTTTGTTTTTGGAAGTGGGAAGTCTCTATATTTGAGGTCTGAGCTGAGCGTGCTCGGCGATGGCCAGATGTCATTTATAGCAGCACAAGCAAGAAAAAACAATGTAGACGATGAAGGCTTCACATTTGTCCATTGCGACATCACCGGAACCGGGAATGGAACCTACTTGGCAAGAGCATGGATGTCTCATTCTAGAGTGATCTATGCTTACTGCAGTATGTCTGATGTTGTGAATGATGCCGGGTGGAGTGACACCATGAGCGCGGACTATGGCGATACTGTGTTTTTTGGAGAGTACAAGAACTCAGGACCTGGTGCAGATGTTAAGGGGCGACCCGAGTATGTGAAGCAGCTAAGTGATGCTGATGTCAAACCTTTCATTACGCTTGCTTCGATTGAAGGTTCCAAATGGCTACTTCCTCCACCAAAAGTCTAG 1101 0.4469 MASKTKICIIQVVFIAFLIADVVRCDDNVPVPADKAQIDKWFSENVGPLAQRKATLDPALVAAEDGTPKVVKVKPDGSGDFKTITEAINSIPIANAKRVIVYIAGGNYNEKVKIDRGKPFITFYGEPGNMPNLTYGGTAKQYGTLDSATLIVESDYFVATNIIFSNSAPKPDGKQGQQAVALRITGDKAAFYNCKFFGFQDTVCDDRNKHFFKDCLIQGTVDFVFGSGKSLYLRSELSVLGDGQMSFIAAQARKNNVDDEGFTFVHCDITGTGNGTYLARAWMSHSRVIYAYCSMSDVVNDAGWSDTMSADYGDTVFFGEYKNSGPGADVKGRPEYVKQLSDADVKPFITLASIEGSKWLLPPPKV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2108 366 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Lja6g2108 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 361 - -
Lja6g2108 366 Pfam Pectinesterase 71 348 IPR000070 GO:0030599|GO:0042545
Lja6g2108 366 Gene3D - 67 362 IPR012334 -
Lja6g2108 366 SUPERFAMILY Pectin lyase-like 68 360 IPR011050 -
Lja6g2108 366 PANTHER PECTINESTERASE 63-RELATED 35 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2108 Lja-Chr6 49690305 49691846 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2108 5 366 Carbohydrate Esterase AT1G69940 53.719 5.11e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2108 K01051 - gmx:100786427 515.768