Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2107 ATGAGCGGCTCAAGGGTTAGTGGTAAGGTGAAGTGGTTCAATGACCATAAGGGTTTCGGGTTCATCACCCCTGACGATGGCGGCGAAGATCTCTTCGTTCACCAGTCTGAGATCAAATCCGATGGGTTTCGGAGCCTCGGTGAAGGAGAGCTAGTCGAGTTCATCGTCAATACCAATTCCGATGGTCGCGCTAAGGCTGTTGATGTGACCGGTCCCAATCAGGCACCTGTCCAGGGAACCCGCAGCGGCGGTGGAGGAGGCGGTGGATATGGCGGTGGTGGAAGAGGAGGCGGGGGTTATGGTGGAGGCGGCGAGTATGGCAGTGGATACGGTGGCAACGGAAGAGGAGGCGGTGGTTACGGTGGAGGCAACAGGTACGGTGGAGGCTTTGGATACGGTGGAAGGGGAGGCGGAAGAGGTGGAGGTGGCGGCGGTGCGTGTTACAGCTGTGGTGAAGAGGGTCACTTGGCTCGCGACTGCGGTAACGGTGGAGGCAAGTACGGAGGCGGCGGCGGTGGCGGTGGAAGCTGCTACACCTGTGGTAATTCTGGGCATTTCGCGAGAGATTGCCCTTCCAACACCCATTGA 588 0.5901 MSGSRVSGKVKWFNDHKGFGFITPDDGGEDLFVHQSEIKSDGFRSLGEGELVEFIVNTNSDGRAKAVDVTGPNQAPVQGTRSGGGGGGGYGGGGRGGGGYGGGGEYGSGYGGNGRGGGGYGGGNRYGGGFGYGGRGGGRGGGGGGACYSCGEEGHLARDCGNGGGKYGGGGGGGGSCYTCGNSGHFARDCPSNTH* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2107 195 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Lja6g2107 195 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lja6g2107 195 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lja6g2107 195 Pfam Zinc knuckle 146 160 IPR001878 GO:0003676|GO:0008270
Lja6g2107 195 Pfam Zinc knuckle 176 192 IPR001878 GO:0003676|GO:0008270
Lja6g2107 195 ProSiteProfiles Zinc finger CCHC-type profile. 177 192 IPR001878 GO:0003676|GO:0008270
Lja6g2107 195 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lja6g2107 195 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lja6g2107 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 121 - -
Lja6g2107 195 Gene3D - 138 167 - -
Lja6g2107 195 Gene3D - 172 195 - -
Lja6g2107 195 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Lja6g2107 195 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
Lja6g2107 195 PANTHER COLD SHOCK PROTEIN 2 1 121 - -
Lja6g2107 195 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lja6g2107 195 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lja6g2107 195 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lja6g2107 195 SUPERFAMILY Retrovirus zinc finger-like domains 137 193 IPR036875 GO:0003676|GO:0008270
Lja6g2107 195 MobiDBLite consensus disorder prediction 68 90 - -
Lja6g2107 195 PANTHER COLD SHOCK PROTEIN 2 113 193 - -
Lja6g2107 195 Gene3D - 2 82 IPR012340 -
Lja6g2107 195 SMART csp_8 7 72 IPR011129 GO:0003676
Lja6g2107 195 ProSiteProfiles Zinc finger CCHC-type profile. 147 160 IPR001878 GO:0003676|GO:0008270
Lja6g2107 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 113 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2107 Lja-Chr6 49684123 49684710 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lja6g2107 CSD 1.4e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2107 - - qlo:115969597 167.162