Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2106 ATGGCTTCAAAAACCAAAATTTGCATTACTCAAGTGGCTTTCATAGCTTTTCTCATAGCTGATGTTGTTCTATGCGATGACAATGTGCCAGTTCCTGCAGATAGGGCTCAAGTTGACAAATGGTTTAGTGAAAATGTTGGGCCCTTAGCTCAGAGGAAGGCTACCCTGGACCCTGCACTAGTGGCGGCGGAGGATTACCCTCCTAAGGTTGTGAAGGTTAAGCCAGATGGAAGCGGCGATTTCAAGACCATCACGGAGGCCATTAACAGCATTCCTATAGCGAACGCCAAGCGTATGATTGTGTACATTGCAGGCGGAAATTATAATGAGAAAGTGAAAATTGATAGAGGAAAGCCATTTATTACCTTTTATGGAGAACCAGGGAACATGCCAAACTTGACATATGGGGGCACTGCAAAACAATATGGCACTCTTGACAGTGCTACATTGATCGTTGAATCGGATTACTTTGTGGCCACTAACATCATCTTCTCGAACTCTGCACCAAGACCTGATGGAAGGGAGGACGAACAAGCAGTAGCATTGAGAATTACTGGTGACAAAGCAGCATTTTATAACTGCAAGTTTTTTGGATTCCAGGACACGTTGTGTGATGATAGGAATAAGCATTTCTTCAAAGATTGCTTTTTTCAAGGCACCGTGGACTTTATTTTTGGAAGTGCGAAATCTCTATATTTGAGGTCACAGCTGAACGTGCTCGGCGATGCCCAAATGACAGCAATAGCAGCACAAGGAAGGAAAAACACGGTAGATGACGAAGGCTTCACATTTGTCCATTGCGACATCACTGGAACCGGGAATGGAACCTACTTGGCAAGAGCATGGATGTCTCATTCTAGAGTGATTTATGCTTACTCCCAAATGACCGATGTTGTGAATGATGCCGGGTGGACCGACACCATGGCGGTGGACTATGGCGAGACTGTGTATTTTGGAGAGTACAATAACGCAGGACCTGGTGCAGATCGTACTGGGCGACCTGAGTATGTGAAGCAACTAAGTGATGCTGAGGTCAAACCTTTCATTACGCTTGCTTCGATTGAAGGTTCCAAATGGCTACTTCCTCCATCAAAAGTCTAA 1101 0.4496 MASKTKICITQVAFIAFLIADVVLCDDNVPVPADRAQVDKWFSENVGPLAQRKATLDPALVAAEDYPPKVVKVKPDGSGDFKTITEAINSIPIANAKRMIVYIAGGNYNEKVKIDRGKPFITFYGEPGNMPNLTYGGTAKQYGTLDSATLIVESDYFVATNIIFSNSAPRPDGREDEQAVALRITGDKAAFYNCKFFGFQDTLCDDRNKHFFKDCFFQGTVDFIFGSAKSLYLRSQLNVLGDAQMTAIAAQGRKNTVDDEGFTFVHCDITGTGNGTYLARAWMSHSRVIYAYSQMTDVVNDAGWTDTMAVDYGETVYFGEYNNAGPGADRTGRPEYVKQLSDAEVKPFITLASIEGSKWLLPPSKV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2106 366 Gene3D - 68 363 IPR012334 -
Lja6g2106 366 SUPERFAMILY Pectin lyase-like 67 360 IPR011050 -
Lja6g2106 366 PANTHER PECTINESTERASE 63-RELATED 35 361 - -
Lja6g2106 366 Pfam Pectinesterase 71 350 IPR000070 GO:0030599|GO:0042545
Lja6g2106 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2106 Lja-Chr6 49673214 49675782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2106 12 363 Carbohydrate Esterase AT1G69940 52.691 8.12e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2106 K01051 - gmx:100786427 493.812