Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2095 ATGCAGGGTACTGAGAAGTTAAATGGCACAGGATCTACAAAATCCAGTAACTCAGAGGAACATGCTGAGTCAAAGGTAGATTCATTGAGATACAGAACAAATATAACAAAATGCCGAGGGAAGAAACAAAAACTGAAATCAAAATCTCATAAACTCAGCGGTTGCTTAAGTGCATCAGGGAGGACAGTTACCAATTCTTCCATCAAGAGACAAGTAAAGGATTCTTCTAATAAAAAGATTATTAGACAAAGTCTACATAAAACTGATGGCAAATCTTCACGGATGCTGTCTTCAACAATGATACAAGGAGGAAAATCTTCTCTTGGTTCTAGAAAGGAGGGCAAAGATGTTGATGGGGAGGTAATGGTTCAAAAAGTTAAAAGAAAGAGAAAGAAGAAAAGGAGACAGGATGATGTTGATCTTGATGATGCTTCACGCTTACTGAGAAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAATCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCCAAGAAGCAGATTTTGAATTGTAAACTTAGTATTCGGGATGCCATTCGCCAGTTAGATTCTCTTAGCTCATTGGGCAGCATTGAAGATTCTGTCATTGATCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAATTGCAAGTTGCGTGAAGCTTTCCCAGATAATGATATAATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAACGGTGTCTCAACCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTCTGCAATTTTTGTGAATGTAAGATAGAAATATTGGAGGCAACAAATGCCCATCTTGGGACTCAAATCTCCTTGGACAGTACTTGGCAGGATGTATTCAAGGAGGAGGCTGCTATACCCGATGGTGATAATGCATTACTGAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGACGATGATTATTATCCAGAGAGGAAAGAAGACAACCACAGCATCAAAGCAGAAGGAACTGATGATAATGCATCCAATGATTTAAGCAGTTCTTCCAGTCTAGGGTCTTTGAATGGTGAATGTTCTCCAGTAGATGAAGGCACGGGTCTTGAATATTATTCTGTTAATTGCTGCATAGATTCTGATGATTCTGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAATCTGTTGACTACAAGAAACTATATGATGAAATGTTTGGGAAGGATGCTCCTCCATGTGAACTAGTGAGTGAAGATGAAGACTGGGGTACTGGCAAAAGAAAGCGAAGAGAAAAAGAGTCTGATGCTGTTAATACTCTCATGACTATGCATGAAAGTGAGAACAAAAATCCCAATAATGAGAATAGTGATGGAATAAGAGAGGGTTCTTCAGGCAAACCAATAAGAAGGTCTTGTTTCAGGATTCCACATGATGCACTTGAGAAGCTTCGCCAAGTTTTTGCGGAGAATGAGCTTCCTCCAAGATCTGTCAAAGAAGGTCTTTCGAAAGAGTTGGGAATTGATGCTGCGAAGGTTAGCAAATGGTTCAAAAATGCACGCTACTTCGCACTTAAAGCAAGAAAATATCAAGCAGGAGGAGAGCAACTTCAGAGTTTCACTTCTAAGACTCCAAAGGATTCTAGATCGCAGAATGTGGATAAAGATGAGCTTTTGAAATCAATGGCCTCCAAAATTACTGTGACTCAATACCAGAAGAATGGTAAAAATGTCACTGGCAGAGAGAAAATAAAATCATGTAGCAGTCCTTTGAAGAAAAGACGACTACAAATACCTCCACCCTTAAGAGAAAACGGCAACAAGGGTTCCATGGAGGTCAATGATGATGTTAGTTTAAAGAAACTGTTGAAAGAAAAGAAAACAAGGGTCAATTTTATATCTGAAGGAGACTCTCAGGCAGCAGAATTGGAATTCGAAAGGATCAGCAAACTGAAGGCTAAACTAGATAGTATGAAGCAAAAATTAACTGAAGTTCAAAATCTCAGGGCAAGTGGTTCAGATAAACTCTGTTCAAATGAGCCATCTGTTATATATGTACCTATAGCTGAGTTAAGGGAAAAAGTGGAATAA 2151 0.3952 MQGTEKLNGTGSTKSSNSEEHAESKVDSLRYRTNITKCRGKKQKLKSKSHKLSGCLSASGRTVTNSSIKRQVKDSSNKKIIRQSLHKTDGKSSRMLSSTMIQGGKSSLGSRKEGKDVDGEVMVQKVKRKRKKKRRQDDVDLDDASRLLRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLSSLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAAIPDGDNALLNPEEEWPSDDPEDDDYYPERKEDNHSIKAEGTDDNASNDLSSSSSLGSLNGECSPVDEGTGLEYYSVNCCIDSDDSGEIACGRRQRKSVDYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTMHESENKNPNNENSDGIREGSSGKPIRRSCFRIPHDALEKLRQVFAENELPPRSVKEGLSKELGIDAAKVSKWFKNARYFALKARKYQAGGEQLQSFTSKTPKDSRSQNVDKDELLKSMASKITVTQYQKNGKNVTGREKIKSCSSPLKKRRLQIPPPLRENGNKGSMEVNDDVSLKKLLKEKKTRVNFISEGDSQAAELEFERISKLKAKLDSMKQKLTEVQNLRASGSDKLCSNEPSVIYVPIAELREKVE* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2095 716 MobiDBLite consensus disorder prediction 346 360 - -
Lja6g2095 716 SMART HOX_1 489 551 IPR001356 GO:0003677
Lja6g2095 716 MobiDBLite consensus disorder prediction 430 491 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 553 572 - -
Lja6g2095 716 CDD homeodomain 495 542 IPR001356 GO:0003677
Lja6g2095 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
Lja6g2095 716 Pfam Homeodomain 497 541 IPR001356 GO:0003677
Lja6g2095 716 SMART PHD_3 234 287 IPR001965 -
Lja6g2095 716 MobiDBLite consensus disorder prediction 72 89 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 460 481 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 1 17 - -
Lja6g2095 716 SUPERFAMILY FYVE/PHD zinc finger 225 291 IPR011011 -
Lja6g2095 716 PANTHER POLYCOMB PROTEIN PCL 11 688 - -
Lja6g2095 716 SUPERFAMILY Homeodomain-like 485 542 IPR009057 -
Lja6g2095 716 Gene3D - 489 552 - -
Lja6g2095 716 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Lja6g2095 716 MobiDBLite consensus disorder prediction 430 459 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 331 345 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 361 379 - -
Lja6g2095 716 CDD PHD_PRHA_like 234 286 IPR045876 -
Lja6g2095 716 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Lja6g2095 716 ProSiteProfiles 'Homeobox' domain profile. 487 547 IPR001356 GO:0003677
Lja6g2095 716 MobiDBLite consensus disorder prediction 50 71 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 18 34 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 35 49 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 90 106 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 320 380 - -
Lja6g2095 716 MobiDBLite consensus disorder prediction 1 118 - -
Lja6g2095 716 Coils Coil 661 688 - -
Lja6g2095 716 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 11 688 - -
Lja6g2095 716 Pfam PHD-finger 234 289 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2095 Lja-Chr6 49540247 49552376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2095 133 655 Homeobox Transcription Factor Family AT4G29940 47.122 7.65e-151 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lja6g2095 Homeodomain 5.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2095 - - gmx:100787118 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2095 6 49540247 49552376 Lja6g2095 6 49540247 49552376 ECH
Lja4g1622 4 15189399 15193777 Lja6g2095 6 49540247 49552376 PCT