Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2093 ATGACGACGGAGCAGACGAAGTTCAGCGTGCTCTGCAGCCTATTCACATGGACGCAGAGAACCAAGTCGCCGGCGAAGAAGCGTTCCAAGTTCCGCAAGTTCCTCGACTCCTTCTGCAGAGACGCTAACTACTTCCCCGCCATTCGCCTCATCCTCCCTAACCTCGACCGCGAACGCGGCTCCTACGGCCTCAAAGAGTCCGTCCTCGCCACCTCCCTCATCGACGCTCTCGGTATGGCTAGGGATTCTCAGGATGCTCTCCGCCTCATCAATTGGCGTAAAGGCGGTGCTAAAACTGGTGCTAGTGCCGGCAATTTCGCACTCGTCGCCTCTGAGGTGCTGCAGCTTAGGCAAGGGACTGCTTCTGGTGGTTTGACGATAAAGGAGTTGAATGACTTGCTTGATCAATTGGCTTCGAGCGAAAACAGGGCTGAGAAGAATCTGGTTCTTTCTACCCTTATCAGAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATTCTCAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTCCATGAATTCCATCCAGATGCCGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAGCTAAAGGATCGGAACCAGCGCCATAAACGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAATTAGCTAAGAGAGTTGCTAATGCAGCTGAAGCATGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTTGAGTGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCAATGTCAGCAATCATAATACAAAACATTCTTGTAGACAGGTGTATCCTTGATGGTGAAATGTTGGTCTGGGACACATCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTCATAGAAAGTTATGCTATGTTGCATTTGATATTCTTTATTTTGGAGATACTAGTGTGATTCACCAAACTTTAAAGGAACGGCATGAGATTCTTCGTAGAGTCGTGAGGCCAATGAAGGGCCAATTGGAAATTTTAGTACCTAATGGTGGTATCAACAGTCACCGTTCTTCTGGTGAACCATGTTGGTCATTTATTGCTCATAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACCATTGAAAATAGAGATGAGGGAATTGTTGTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGATCGCAGTGGAAAGTGGCTGAAATTGAAGCCTGAATACATTCAAGCTGGTTCTGATCTAGATGTACTCATCATAGGTGGCTACTATGGCTCTGGACGACGTGGAGGAGAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAGCGTCCATCTCCAAATACACATCCCAAGCGATTTATCTCCTTTTGCCGGGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCTGTAATATCAAAACTAAAACCTTACTTCAGGAAGTATGAATATCCAAAGAAGAGGCCACCGAGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTGTTCTGTCTATAACAAGTGATATCCGAACTATACAATCTGAGGTATTTTCTGCACCTTACAGCCTGAGATTTCCTCGAATTGACAGGGTGAGATACGACAAGGCCTGGCATGAATGCCTTGATGTGCAATCATTTATAGAACTTGTGCATTCCAGCAATGGTACCACACAGAGGGATACAGAGCATGGCAGCAAGCAGGACAGTAAATCAAATCGCATCAAATCCTCCAGACGGGGAGAAAAGAAAAACATGTCTATTGTTCCTTCCCATTTAATACAAACTGATGTTTCCAGTGTTAAAGGGGGGTCCTTAATATTTTCAAATATGATGTTTTACTTTGTAAATGTGCCTCCATGTCATTCTCTCGAGTCCTTGCACAAAATAATTGCTGAGAATGGGGGAACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAAGGGTTTAAATTTGAAGCAGCAAAACGCCATGGTGATATCATTCATTATACTTGGGTATTTGATTGCTATGCACAAAAGAAGCTTGTCCCATTACAACCAAAGTACTTCCTGTTCCTATCTGAACTGACAAAGAAGAAGTTACAAGAAGAAATCGATGAGTTCTCGGACTTTTACTATTTGGATCTTGATATTGGAGATATCAAACAGCTTTTAAGCAATATTCATAGGTCGGAAGATGTCAGCACTGTTGATCATTATAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGCGGATGCTCCGTTTATTTCCACACTGTAATACCATCATTGAAAGAAGATTGGCAATTTCTATTGGGACTTTCTTTGAGGAGATTCAAGCTCGAAGTTCTCATGGGTGGTGGAAAAGTTGCTGATAATATTAATTGTGCTACTCATCTAGTGACTTTGTTTGTGCCAAGATGTCATACTAACTTTTGGGAAGAAATTCAGAGTAGTTTCACTTCAGTAGAGAGAAGAATTCTTCGAAGCAAGAGGTTGCATATAGTTAAATCGCAGTGGTTAGAGGATTGTTTGAACAGTAGCCAAAGATTACCAGAAGATGCCTATAGCTTGAGACCCGATGGAATAGAAGAATCAACTACTGAAGATTGTGAATATGACTTGGCGTTAGACACCCATCTGGTTGGAGATAATGTAGAGGACCAAAATACATCTTTCTCTGACCTTGAAAGTAAACATAGAACTGCAAAAGCTGCTAATGAACCAAGTTTGGCTTCGGTGTCCCAGGAGAAGGGTGGCGGAAGGAAAAGAGGAAGACCTGCAGGCAGAGGTACCAAAAACGTAAAAACAGCCGGTAACCAAGCTCCCAGAGGCAGAGCACGAGCACAAGTTGCGAGAAAGCGGCCTAAAATATGTGAATATGAATCAGATGATGACAGGGATTCTCAACAAATAAGACCACAAGGGCAAGACACAAGAGAAGGAGGTCTTAATTTTAATGAGAAGCATTTAGAACCCCATGAGACCAAGAAACCTGAAAATGTTCAAGATACTGAAACCGTTGAAAGTTCTCAGCAAAACGAGGCATTCAAGCCAGAGGATTCGAAGGAAAGAGAATTTGAAAGAATATTTGTTCCTGAAATCGAAATGACTGATAGGCACAATGGCCATAACAGTCAGGTGAGTGAGAAACTTGAAATTTTGGCAGATCCCGTGCAGGCCATGTTATTTGACATGATTCCTAGCCTTGCCCCCAAGAATGTTAGCTACAAGGCTATTGCTGCCGAGCTGCTCAAGGACTGGTAG 3426 0.4227 MTTEQTKFSVLCSLFTWTQRTKSPAKKRSKFRKFLDSFCRDANYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMARDSQDALRLINWRKGGAKTGASAGNFALVASEVLQLRQGTASGGLTIKELNDLLDQLASSENRAEKNLVLSTLIRKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSAIIIQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSHRKLCYVAFDILYFGDTSVIHQTLKERHEILRRVVRPMKGQLEILVPNGGINSHRSSGEPCWSFIAHNVDEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVISKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIVLSITSDIRTIQSEVFSAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVHSSNGTTQRDTEHGSKQDSKSNRIKSSRRGEKKNMSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPPCHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYTWVFDCYAQKKLVPLQPKYFLFLSELTKKKLQEEIDEFSDFYYLDLDIGDIKQLLSNIHRSEDVSTVDHYRKKYCPKDKWSFFCGCSVYFHTVIPSLKEDWQFLLGLSLRRFKLEVLMGGGKVADNINCATHLVTLFVPRCHTNFWEEIQSSFTSVERRILRSKRLHIVKSQWLEDCLNSSQRLPEDAYSLRPDGIEESTTEDCEYDLALDTHLVGDNVEDQNTSFSDLESKHRTAKAANEPSLASVSQEKGGGRKRGRPAGRGTKNVKTAGNQAPRGRARAQVARKRPKICEYESDDDRDSQQIRPQGQDTREGGLNFNEKHLEPHETKKPENVQDTETVESSQQNEAFKPEDSKEREFERIFVPEIEMTDRHNGHNSQVSEKLEILADPVQAMLFDMIPSLAPKNVSYKAIAAELLKDW* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2093 1141 SUPERFAMILY BRCT domain 792 913 IPR036420 -
Lja6g2093 1141 MobiDBLite consensus disorder prediction 943 1078 - -
Lja6g2093 1141 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Lja6g2093 1141 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lja6g2093 1141 Pfam BRCT domain, a BRCA1 C-terminus domain 654 737 IPR001357 -
Lja6g2093 1141 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Lja6g2093 1141 Coils Coil 127 147 - -
Lja6g2093 1141 ProSiteProfiles ATP-dependent DNA ligase family profile. 336 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lja6g2093 1141 PANTHER DNA LIGASE 4 2 911 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Lja6g2093 1141 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lja6g2093 1141 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lja6g2093 1141 SMART BRCT_7 815 901 IPR001357 -
Lja6g2093 1141 SMART BRCT_7 654 730 IPR001357 -
Lja6g2093 1141 CDD OBF_DNA_ligase_IV 449 593 - -
Lja6g2093 1141 MobiDBLite consensus disorder prediction 611 635 - -
Lja6g2093 1141 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Lja6g2093 1141 Gene3D BRCT domain 668 780 IPR036420 -
Lja6g2093 1141 CDD BRCT_DNA_ligase_IV_rpt1 656 742 - -
Lja6g2093 1141 Gene3D BRCT domain 798 911 IPR036420 -
Lja6g2093 1141 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lja6g2093 1141 MobiDBLite consensus disorder prediction 1006 1027 - -
Lja6g2093 1141 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Lja6g2093 1141 MobiDBLite consensus disorder prediction 604 635 - -
Lja6g2093 1141 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lja6g2093 1141 Gene3D - 445 606 IPR012340 -
Lja6g2093 1141 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Lja6g2093 1141 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lja6g2093 1141 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Lja6g2093 1141 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Lja6g2093 1141 SUPERFAMILY BRCT domain 287 741 IPR036420 -
Lja6g2093 1141 MobiDBLite consensus disorder prediction 1036 1057 - -
Lja6g2093 1141 ProSiteProfiles BRCT domain profile. 840 911 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2093 125 602 Core DNA Replication Machinery Family AT1G08130 25.763 5.80e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2093 K10777 - gmx:100816002 1885.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2093 6 49507788 49521816 Lja6g2093 6 49507788 49521816 ECH