Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2092 ATGGAGAATATTGGTCAGGAATACAAGCATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTAGACAGTTGGGGATTGGATGAAGCTTTATCTTACTATGATTCGAGTTCCCCTGATGGCGCTGCTTCATCTGCTGCATCTAAGAACATTGTTTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGACTCTTTGCACTTAGATCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATTGAGTACATAGAGCACTTGCATGAGCAAGAGAAGATAATCCAAGCTGAGATAATGGAGCTTGAATCTGGGATCCCAAAGAATATGAATAATCCAAGCTATGACTTTGATCAGGAGCTGCCTGTGTTGCTGAGGTCCAAGAAGAAGAGAACAGAGCAGCTATATGACTCTGTTCCTTCTAGAAATACCCCAATTGAAGTCCTTGAGCTCAGGGTTACATACATGGGAGAGAAAACTGTTGTTGTGAGCTTGACATGCAGCAAAAGGACAGACACAATGGTAAAATTGTGTGAGGTGTTCGAATCTTTGAAGCTGAAGATAATTACAGCTAATATCACCTCGTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCTTTTACAGATAAAGATCCAAACGGCCATTGCAGCACTTAATGATCCTCTAAGCCCTATGAGCATCTAG 732 0.418 MENIGQEYKHYWETNMFLQTQELDSWGLDEALSYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIEHLHEQEKIIQAEIMELESGIPKNMNNPSYDFDQELPVLLRSKKKRTEQLYDSVPSRNTPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDLLQIKIQTAIAALNDPLSPMSI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2092 243 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Lja6g2092 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Lja6g2092 243 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
Lja6g2092 243 SMART finulus 52 101 IPR011598 GO:0046983
Lja6g2092 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Lja6g2092 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 112 IPR036638 GO:0046983
Lja6g2092 243 Gene3D - 42 111 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2092 Lja-Chr6 49472338 49489125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2092 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 67.431 1.08e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g2092 HLH 5.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2092 - - gmx:100817978 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2092 6 49472338 49489125 Lja6g2092 6 49472338 49489125 ECH