Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2084 ATGGTCAGCAAAGAGGAAGTGAAAGCGGTGGTTCCTGAATCCGTGTTGAAGAAGCAGAAGAGGAACGAGGAATGGGCATTGGCAACGAAGCAGCAACTCGAAGCCGCCAAGAAGAAGAGGGCTGTATCTCGCAAGCTGATTTGGAGCAGAGCCCAACAGTATGCCAAGGAATACGATGAGCAGCAGAAGGAGCTTGTTAGGTTGAAGCGTGAAGCTAAGCTCAAGGGTGGGTTCTATGTCAACCCTGAAGCTAAGCTCTTGTTCATCGTCAGGATCAGAGGTATCAATGCTATGCACCCCAAAACCAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATCTTTAATGGTGTATTCCTCAAGGTCAACAAAGCAACCGTGAATATGCTACAGAGAGTAGAGCCTTATGTTACTTATGGTTATCCTAATTTGAAGAGTATCAGAGAATTGATCTACAAGAGGGGATACGGGAAAGTTAACAAACAGAGAATTGCTTTGACAGACAACTCTGTTATTGAACAGACTCTTGGGAAGCATGGAATTATTTGCATTGAAGATCTGATCCATGAGATATTGACTGTTGGACCTCACTTCAGGGAGGCCAATAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCTCTTGGTGGTCTGAAGAAGAAAAGAAATCATTATGTTGAAGGGGGTGATGCTGGCAACAGGGAAGATTACATTAATGAGCTTATTAGGAGGATGAATTAA 738 0.4417 MVSKEEVKAVVPESVLKKQKRNEEWALATKQQLEAAKKKRAVSRKLIWSRAQQYAKEYDEQQKELVRLKREAKLKGGFYVNPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIALTDNSVIEQTLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2084 245 Pfam Ribosomal protein L30p/L7e 87 137 IPR016082 -
Lja6g2084 245 PANTHER 60S RIBOSOMAL PROTEIN L7 6 245 IPR039699 -
Lja6g2084 245 SUPERFAMILY Ribosomal protein L30p/L7e 86 245 IPR036919 -
Lja6g2084 245 TIGRFAM uL30_euk: 60S ribosomal protein uL30 12 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lja6g2084 245 Coils Coil 51 75 - -
Lja6g2084 245 Pfam Ribosomal L30 N-terminal domain 11 81 IPR012988 -
Lja6g2084 245 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 6 245 - -
Lja6g2084 245 ProSitePatterns Ribosomal protein L30 signature. 105 137 IPR018038 -
Lja6g2084 245 Gene3D - 192 245 IPR036919 -
Lja6g2084 245 Gene3D - 86 191 IPR036919 -
Lja6g2084 245 CDD Ribosomal_L7_archeal_euk 86 245 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2084 Lja-Chr6 49388275 49390814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2084 2 245 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 79.918 2.23e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2084 K02937 - jre:109006184 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2084 6 49388275 49390814 Lja6g2084 6 49388275 49390814 ECH