Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2083 ATGAATTTCCAGAACGGCTCTTCGCCTCGCCGTGCGTCGGCGGCGGCGGAGAATGATATCGAGGCTGGTCCGGCGACTCGCCGCTCCTCTGACTTCGATGATGTTGATGTTAACGATCCATTTGACATTGCGAGGACCAAACACGCCTCGGTTGAGCGACTCAGGCGGTGGAGGCAAGCGGCCCTTGTGCTAAATGCTTCTCGTCGATTTCGGTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAACATATATTGAGAAAGATTCGAGCGCATGCACAAGCTATTAGAGCAGCATATCTTTTTAAAGCAGCTACTACTGATGGGGGGCAAGTGAGTGAAACTATTAAACCCCCTTTGACCTCCACTGGTGAATTTCCAATTGGACCAGAGCAACTTGCTTCAATTTCAAGGGAGCATGATACTGCTGCTTTACAGCAATATGGAGGGGTTGCAGGGATATCAAATTTACTGAAAACCAATTTAGAGAAGGGGGTTATTGACGATGATGCTGATTTACTGAAACGCAAGAATGCATTTGGATCTAATAATTATCCTCGAAAGAAGGGAAGACCTTTTTGGATGTTTTTGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCTGCGGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTGAAGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCTGTTCTTCTTGTTATTTTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTACAATTTCGGGACCTAAATGAAGAGAAGAGAAATATACACCTAGAGGTTATTAGAGGTGGGAGAAGGGTTGAGATCTCAATATATGATATTGTTGTTGGCGATGTTATACCCCTCAATATTGGTAACCAGGTCCCTGCCGATGGAATTCTAATAGCTGGTCACTCCCTTGCAATTGATGAGTCAAGCATGACAGGGGAGAGCAAAGTTGCCCATAAGGATTCTAAGGATCCCTTTCTGATATCTGGATGTAAAATTGCAGATGGCAGTGGCACTATGTTGGTAACTGGTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCTGAAGATACTGGTGAAGAGACACCTTTGCAGGTCCGCTTAAACGGTGTTGCCACCTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTCTTGTCCTGTTTGTGCTACTAGGCAGATATTTCAGTGGGCATACCAAAGATACAAATGGGATAGCTCAATTTAAAGCAGGCAAGACTAAAGTGGGTGATGCTATTGATGGAGCAATTAAGATATTAACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAGGGGCTCCCACTAGCAGTTACTTTAACATTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCTGCCTGTGAGACAATGGGCTCTGCGACAACCATATGCAGTGATAAGACTGGGACATTGACTATGAATCAGATGACTGTGGTTGAGGTTTATGCTGGGGGAAAGAAAATTGATCCTCCTCACCAGTTGGAGAGCTTTCCTATGGTACGCTCTCTGCTCATTGAAGGTGTTGCACACAACACTAACGGCAGTGTTTACGTACCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCACCTACAGAGAAGGCAATTTTACACTGGGGAGTAAAGCTTGGGATGAACTTTGCGGCTGCTCGGTCAGAATCGTCAATTATCCACGTCTTTCCATTCAATTCAGAGAAAAAGAGAGGCGGAGTTGCGATCCAGGCTGACTCTGATGTCCATATACATTGGAAAGGTGCCGCTGAGATAGTTCTAGCCTGCTGTACAGGGTATATTGATGCAAATGACCACTTGGTGGGGATGGATGAAGAGAAGATGGCATTTTTCAAAAAAGCTATTGAAGACATGGCTGCGGATAGTCTACGTTGTGTTGCAATTGCATATAGATCATATGAAAAGAAGAATGTTCCAGCTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGGATGATCTTGTTTTACTAGCTATTGTTGGTATCAAGGATCCTTGTAGACCTGGTGTCAAAGATTCAGTGGAGCTTTGCCAAAAAGCTGGGGTTAAGGTGAAAATGGTCACTGGTGATAATGTCAAAACTGCTAAAGCAATTGCTGTGGAATGTGGAATACTTAGTTCGTTTGCTGAAGCTACAGAGCCAAACATCATTGAGGGGAAAAGATTCCGTGCCATGTCAGATGCAGAGAGAGATGAAATTGCAGATGCAATTTCGGTTATGGGACGGTCATCTCCCAATGACAAGCTATTGTTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTTGCTGTCACTGGCGATGGAACGAATGATGCTCCTGCACTTCATGAGGCCGATATAGGTCTTGCGATGGGTATTGCTGGTACAGAAGTAGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTGACAGTCAATGTGGCAGCTCTTGTTATTAATGTTGTTGCTGCAATTTCCTCTGGTGATGTCCCCCTAAATGCAGTGCAGCTTCTCTGGGTAAATCTTATCATGGATACTCTCGGAGCACTAGCATTGGCAACTGAACCACCAACTGATCACCTGATGGATCGATCTCCTGTCGGTAGAAGAGAGCCTCTGATAACAAATATTATGTGGAGGAATTTACTGATACAGGCAATGTATCAAGTGTCTGTCTTGCTTGTTCTCAACTTCCGAGGTAGGAGCATACTGGGTCTGACTCATGACAAGTTTGACCATGCGGTCAAAGTAAAGAACACTTTGATCTTCAACGCATTTGTTCTCTGTCAAATCTTTAACGAATTTAATGCTCGAAAGCCAGATGAGTTCAACATTTTCAAAGGAGTCACGAAAAACTACCTCTTTATGGGGATAGTGGGATTAACTGTTGTGCTTCAGATTGTCATCGTCGAATTTCTTGGGAAATTCACTTCAACAGTCAGGCTAAATTGGAAGCAGTGGCTTATATGTGTCATCATTGGATTTATTGGTTGGCCTCTTGCTGTTGTCGGGAAATTCATACCAGTTCCAGAAACTCCTGTGAATAACTATTTCTCAAGAACTTTTCAGCGAGTTAAAAGAATTTTTTGGCGAACTTCAGGAAAGAAGGAGGAACCTGAGACTGAGGCTTCACATTAG 3294 0.4353 MNFQNGSSPRRASAAAENDIEAGPATRRSSDFDDVDVNDPFDIARTKHASVERLRRWRQAALVLNASRRFRYTLDLKKEEEKKHILRKIRAHAQAIRAAYLFKAATTDGGQVSETIKPPLTSTGEFPIGPEQLASISREHDTAALQQYGGVAGISNLLKTNLEKGVIDDDADLLKRKNAFGSNNYPRKKGRPFWMFLWDACKDLTLIILMVAAAASLALGIKSEGIEEGWYDGGSIAFAVLLVIFVTAVSDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILIAGHSLAIDESSMTGESKVAHKDSKDPFLISGCKIADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLFVLLGRYFSGHTKDTNGIAQFKAGKTKVGDAIDGAIKILTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGKKIDPPHQLESFPMVRSLLIEGVAHNTNGSVYVPEGANDVEVSGSPTEKAILHWGVKLGMNFAAARSESSIIHVFPFNSEKKRGGVAIQADSDVHIHWKGAAEIVLACCTGYIDANDHLVGMDEEKMAFFKKAIEDMAADSLRCVAIAYRSYEKKNVPANEELLAHWSLPEDDLVLLAIVGIKDPCRPGVKDSVELCQKAGVKVKMVTGDNVKTAKAIAVECGILSSFAEATEPNIIEGKRFRAMSDAERDEIADAISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLTHDKFDHAVKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTVVLQIVIVEFLGKFTSTVRLNWKQWLICVIIGFIGWPLAVVGKFIPVPETPVNNYFSRTFQRVKRIFWRTSGKKEEPETEASH* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2083 1097 SUPERFAMILY Calcium ATPase, transduction domain A 269 364 IPR008250 -
Lja6g2083 1097 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 764 877 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja6g2083 1097 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 432 514 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja6g2083 1097 MobiDBLite consensus disorder prediction 1 37 - -
Lja6g2083 1097 SUPERFAMILY HAD-like 489 902 IPR036412 -
Lja6g2083 1097 Pfam E1-E2 ATPase 269 469 - -
Lja6g2083 1097 CDD P-type_ATPase_Ca_PMCA-like 173 930 - -
Lja6g2083 1097 Pfam Cation transporting ATPase, C-terminus 882 1058 IPR006068 -
Lja6g2083 1097 Gene3D - 49 104 - -
Lja6g2083 1097 SFLD Haloacid Dehalogenase 473 849 - -
Lja6g2083 1097 Gene3D - 501 697 IPR023299 GO:0000166
Lja6g2083 1097 Pfam Ca2+-ATPase N terminal autoinhibitory domain 38 81 IPR024750 GO:0005516
Lja6g2083 1097 ProSitePatterns E1-E2 ATPases phosphorylation site. 493 499 IPR018303 -
Lja6g2083 1097 Gene3D - 488 842 IPR023214 -
Lja6g2083 1097 Gene3D - 173 367 - -
Lja6g2083 1097 PRINTS Sodium/potassium-transporting ATPase signature 608 626 - -
Lja6g2083 1097 PRINTS Sodium/potassium-transporting ATPase signature 234 254 - -
Lja6g2083 1097 PRINTS Sodium/potassium-transporting ATPase signature 484 505 - -
Lja6g2083 1097 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 140 1061 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja6g2083 1097 PRINTS P-type cation-transporting ATPase superfamily signature 690 701 - -
Lja6g2083 1097 PRINTS P-type cation-transporting ATPase superfamily signature 315 329 - -
Lja6g2083 1097 PRINTS P-type cation-transporting ATPase superfamily signature 797 816 - -
Lja6g2083 1097 PRINTS P-type cation-transporting ATPase superfamily signature 821 833 - -
Lja6g2083 1097 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Lja6g2083 1097 PRINTS P-type cation-transporting ATPase superfamily signature 712 722 - -
Lja6g2083 1097 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 1061 IPR023298 -
Lja6g2083 1097 Gene3D - 199 1049 - -
Lja6g2083 1097 PANTHER CATION TRANSPORTING ATPASE 21 1079 - -
Lja6g2083 1097 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 702 IPR023299 GO:0000166
Lja6g2083 1097 Pfam Cation transporter/ATPase, N-terminus 149 216 IPR004014 -
Lja6g2083 1097 SMART Cation_ATPase_N_a_2 147 221 IPR004014 -
Lja6g2083 1097 SFLD p-type atpase 473 849 IPR044492 -
Lja6g2083 1097 Pfam haloacid dehalogenase-like hydrolase 488 811 - -
Lja6g2083 1097 PANTHER CALCIUM-TRANSPORTING ATPASE 21 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2083 Lja-Chr6 49360036 49373246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2083 7 1096 Primary Pumps ATPases AT5G57110 73.925 0.0 1602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2083 K01537 - gmx:100792945 1838.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2083 6 49360036 49373246 Lja6g2083 6 49360036 49373246 ECH
Lja4g1603 4 15009424 15019787 Lja6g2083 6 49360036 49373246 PCT