Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2078 ATGATCATGGCGGTGGAAACCTTCAACATGATCAGGATGGATGAACACACAGCCATACAAGAAGCTGCTTCAGCTGGCTTAAACAGCATGGAGCATCTCATCCGAATCCTCTCTTCTCAAACCCCTTCTTCTTCAACTCCATCATCATCTCACAGAAACAACAACAACAACAACCTCGACTACTCCGAAATCACCGACTTCACTGTCTCCAAGTTCAAACATGTCATCAACCTCTTGAACCGCACCGGCCACGCCCGATTCCGCCGCGCACCACCACAACCACAACCTCAAACTCAGATCAAAGGCTTAACTCTAGATTTCGCTAAACCCACCAACAAGGACGACACCCTCACCATCTCCACCACCAACACCAACTCCTCCTCCTTCAAATCCTCCATCACCGCCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCTTCTTAACTCCAGCTGCCAAGCCACCTCTCTCCACCTCTCACCGGAAAAGATGTCACGACGCCGCCGCACTCTCCTCCGGCCCTTGCCATTGCTCCAAGAAAAGGAAATCACGAGTGAAACAAACGATCCGTGTACCGGCGGTGAGCTCGAAAATCGCCGATATCCCACCGGACGAGTACTCATGGAGGAAGTATGGTCAGAAACCGATCAAGGGTTCACCTTATCCTCGGGGCTACTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTTGAGCGAGCTCAGGATGATCCCAACATGCTGATAGTGACTTACGAGGGCGAGCACCGCCACCAGCAACAGCAAACCGCCGTCGGTTTTAGCCTCCGGTCAAACTGA 825 0.5358 MIMAVETFNMIRMDEHTAIQEAASAGLNSMEHLIRILSSQTPSSSTPSSSHRNNNNNNLDYSEITDFTVSKFKHVINLLNRTGHARFRRAPPQPQPQTQIKGLTLDFAKPTNKDDTLTISTTNTNSSSFKSSITADGSVSDGKIGPFLTPAAKPPLSTSHRKRCHDAAALSSGPCHCSKKRKSRVKQTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPNMLIVTYEGEHRHQQQQTAVGFSLRSN* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2078 274 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 264 IPR044810 GO:0003700
Lja6g2078 274 SUPERFAMILY WRKY DNA-binding domain 200 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2078 274 Pfam Plant zinc cluster domain 161 200 IPR018872 -
Lja6g2078 274 Gene3D WRKY domain 177 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2078 274 MobiDBLite consensus disorder prediction 39 58 - -
Lja6g2078 274 ProSiteProfiles WRKY domain profile. 197 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2078 274 Pfam WRKY DNA -binding domain 204 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2078 274 SMART WRKY_cls 202 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2078 274 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2078 Lja-Chr6 49263793 49265670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2078 3 262 WRKY Transcription Factor Family AT2G24570 51.899 3.29e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g2078 WRKY 2.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2078 - - gmx:732589 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2078 6 49263793 49265670 Lja6g2078 6 49263793 49265670 ECH
Lja4g1598 4 14920308 14921456 Lja6g2078 6 49263793 49265670 PCT