Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2074 ATGGCTGAAATTAATGAAGAGGCTCATGTGGACTTGTCTAATTCTGGAGGCATGAATGAGTTTGAGGATCTGAATGATATCTCAGATAATTCTGATGGAGATGATGTGGTCAATAATGATTCTTCCCAACAACAGTGCAAGCTAATTCCTGAGTTGACTATTGATGAAATTAGGGAGCTGGAGTTTTTGTCTGAGCAGGATGCCGTTGAGTTTTACCAGCACTATGCCCAGTTTAAAGGTTTTGGGGTTAGGAAGGATGATGTTCAGCGCGATCGAAAAGGTAATGTTGTTAGTCGCCAGCTTGTTTGTAATAGGGAAGGTGAGAGACATGAGAAGCATTTGAAAAAGGTTAGTCGAGTGAAAGAGGCTAAGCCAATTACCAGAGTATCATGCCAAGCTAAATTTCGTGTACGTTTCGAGGCAAACTCCAGCAAGTGGAAGGTTGTTTATTTTGAACCTGAGCACAATCATGAGTTGACACTGGCTAAGCAAGTTCATTTAATTCCGGCATTCAGGGGATTGACTAATGGTGATAAGGCTCAAGTTGACACACTAAAGCTCTATGGCGTGAGGAGTTGCAACATGATGGGTCTCATGATGGGACAAAAAGGAGAGATGTGCAACACAGTAATGATAAAGCTGAGTGTATGTGGCAGATCCAGTTCTCAATTCTTGGTTGTTTATGATAAGAATCAGACCACATTTGAGTGTGATTGTGGGCTATCTGATTTTAAGGGCATTCCTTGTTCTCACATCATATGTGCTATGAGGATTGAGGACTTCACCACATTTCCTGCATCTCTTGTTTCCAACCGGTGGTTGAAGACTGCGAAGGTGGATTACATACACACAATACCCTCCATTGAGCTTGATTCTGAAAAAGTGAAATTGTTGCGTAGAGGTGCCATTTCTGTTGCATGCAATTTTCTTAGTGAATATGCCGCTGATGATGCTACAGATTTTTCAGCCGTAATTGAGGATATATACAAACTGGTCTCGAAAGTTCAGAAACGTCGTCATCTGAAATCTACTGAAGGTAATTTATTTGTGATTCGTGACCCAGCTGTCATGAGAACCCGAGGTGCACGAAAGAAGTTGAAGACTAAGAAGAAGAAAAGACTCTGTTCTAATTGCAGAAAGAGTGGCCACACAATCCGGACATGTCCTACATTGTTTGAGGGAGTCAGAGATGATGAAGTAGATGAAGGAGATTCATCTGTTGAGCTGGATGATGATAACATTACTGAAAATGTAAGGCAATGTTGTTTCTTGTATTTGTCATTTTGTTATTATTGA 1296 0.409 MAEINEEAHVDLSNSGGMNEFEDLNDISDNSDGDDVVNNDSSQQQCKLIPELTIDEIRELEFLSEQDAVEFYQHYAQFKGFGVRKDDVQRDRKGNVVSRQLVCNREGERHEKHLKKVSRVKEAKPITRVSCQAKFRVRFEANSSKWKVVYFEPEHNHELTLAKQVHLIPAFRGLTNGDKAQVDTLKLYGVRSCNMMGLMMGQKGEMCNTVMIKLSVCGRSSSQFLVVYDKNQTTFECDCGLSDFKGIPCSHIICAMRIEDFTTFPASLVSNRWLKTAKVDYIHTIPSIELDSEKVKLLRRGAISVACNFLSEYAADDATDFSAVIEDIYKLVSKVQKRRHLKSTEGNLFVIRDPAVMRTRGARKKLKTKKKKRLCSNCRKSGHTIRTCPTLFEGVRDDEVDEGDSSVELDDDNITENVRQCCFLYLSFCYY* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2074 431 SMART 26again6 235 262 IPR006564 GO:0008270
Lja6g2074 431 ProSiteProfiles Zinc finger CCHC-type profile. 375 389 IPR001878 GO:0003676|GO:0008270
Lja6g2074 431 ProSiteProfiles Zinc finger SWIM-type profile. 224 260 IPR007527 GO:0008270
Lja6g2074 431 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 29 230 - -
Lja6g2074 431 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 29 230 - -
Lja6g2074 431 SUPERFAMILY Retrovirus zinc finger-like domains 367 395 IPR036875 GO:0003676|GO:0008270
Lja6g2074 431 MobiDBLite consensus disorder prediction 1 43 - -
Lja6g2074 431 Pfam FAR1 DNA-binding domain 70 160 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2074 Lja-Chr6 49240956 49243256 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2074 FAR1 1.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2074 - - lja:Lj4g3v0120440.1 191.815