Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2072 ATGGAAGGTGATGATGAAGCATGCAACAAGGGCCTGAGTCTGGAACTGAGATTGGGGGCATATGAGTCAAAGGATCAGGAGAAGCAGAAAGTGGAGAAACCTGTTGCTGCAGCTGGTTTGGACTTATCTTTCGATGATGATCATGATCAGGATCATCATGATGACGATGAGGGAAAAGGACTCTTTCTGAAGAGAGGAAATGAAGAACACCATCACCCAAATGAAGAGAGTCCTGATAACACCAATGACAGCAGAAAGAAACTGAGGCTTACCAAGGCACAATCATTCAGACTTGAGGATGCTTTCAAGATGAATGACTCCATTAATGCGGCTCAGAAGCAGGCACTTGCTGAGGAATTGAATTTGAAGCCAAGACAGATCGAGGTTTGGTTCCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACCGAGGTGAATTGCGAGTTCTTCAAGAAAATCCATGAAAAGCTAACCAATGAGAACCTGAGGTTGAAGAAGGAATTGGAGGAGCTTCGTGCACTGAAAGTTGGAGCACCACCACTGCACAGTTCTCATCTCTCCAAGGCTTCTGAAATCCATAGCTTCTGTCCATCTTGCAGGTCACTATTTATACGAAAGCCCAATGAAGGAAACAACAATGCTGCCATTTCCAATGTGGTCCCAAACAGCTGCTGCAAATTGCAGATGAAACGCGTTTAG 699 0.4492 MEGDDEACNKGLSLELRLGAYESKDQEKQKVEKPVAAAGLDLSFDDDHDQDHHDDDEGKGLFLKRGNEEHHHPNEESPDNTNDSRKKLRLTKAQSFRLEDAFKMNDSINAAQKQALAEELNLKPRQIEVWFQNRRARTKLKQTEVNCEFFKKIHEKLTNENLRLKKELEELRALKVGAPPLHSSHLSKASEIHSFCPSCRSLFIRKPNEGNNNAAISNVVPNSCCKLQMKRV* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2072 232 Coils Coil 140 174 - -
Lja6g2072 232 MobiDBLite consensus disorder prediction 42 86 - -
Lja6g2072 232 SMART HOX_1 83 145 IPR001356 GO:0003677
Lja6g2072 232 Gene3D - 47 145 - -
Lja6g2072 232 SMART halz 141 184 IPR003106 GO:0006355|GO:0043565
Lja6g2072 232 CDD homeodomain 85 142 IPR001356 GO:0003677
Lja6g2072 232 PANTHER - 38 216 - -
Lja6g2072 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 38 216 - -
Lja6g2072 232 Pfam Homeodomain 85 139 IPR001356 GO:0003677
Lja6g2072 232 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Lja6g2072 232 SUPERFAMILY Homeodomain-like 74 142 IPR009057 -
Lja6g2072 232 MobiDBLite consensus disorder prediction 21 86 - -
Lja6g2072 232 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2072 Lja-Chr6 49228717 49230393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2072 84 202 Homeobox Transcription Factor Family AT4G37790 61.345 7.33e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lja6g2072 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2072 K09338 - gmx:100790522 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1590 4 14853347 14854705 Lja6g2072 6 49228717 49230393 PCT