Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2070 ATGAGGAAAGGTTGGCGAGAAGATGACTTCCATGATGCTCCGTCATTAGAATCACAGATTCCCTCGTCCAGGTACAAACATGAAACATTGTTCTTCGTCCTTGGAGGGATAGTAGTGGTTGCCATATTGTTTATTCTCTGGTTTGTGTTTCGGAAGCGTATCAAACAGCCAACAAAGCCAAAGGGAAAGACAGCTCCAAGTAAAGAGCACAAAGAGGTGATGAAAATGGTATTTCCATCCAAACAGCAATCAGGGTCCAAGTCCATGTCCATGGAATTCTTTAGTGGAAATCTTCAGTCAATTTGCTTCTTTGACTACCAAACATTGAGGAAAGCAACCCACAATTTTTTTCCTGGTAATCTCCTTGGAAGTGGGGGATATGGGCCTGTCTACAGGGGAAAGTTGGTAGATGGGAGGATGATTGCAGTGAAGACATTGTCCCACAACAAATCACAACAGGGAGAAAGAGAATTCCTGGCAGAGGTGAAAATGATCACTAGCATCCAGCACAAAAATCTGGTTCGCCTTCTCGGATGCTGCATCGATGGACCTCAAAGGATTCTTGTCTATGAATACATGAAAAACAGAAGTTTGGAACTATTTATATATGGAAATGGTGATCAATTTCTGAATTGGAGCACCAGGTTCCAAATTATTCTCGGAGTTGCGCGGGGACTGCAATACCTTCATGAGGACTCACACCTCAGAATTGTTCACCGAGATATCAAAGCAAGCAACATTCTTCTTGATGACAAGTTTCAGCCAAGGATTGGAGACTTTGGACTAGCTAGGTTTTTCCCTGAGGACCAAGATTACCTTAGCACACAGTTCGCTGGAACATTAGGTTATACAGCACCTGAATATGCTACTAGAGGAGAACTGTCAGAAAAGGCAGATATCTATAGTTTTGGAGTCCTCTTGCTGGAAATAATCTGCTGCAGGAAAAATACAATTCGTACTTTACCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTGTATGAGAAGTCAAGTATATTGGATATTGTAGATCCAAAGCTGCGACGAGAGCATGGATTCGTAGAAAAGGACGTTATGCAAGCAATCCATGTTGCTTTCTTATGTCTTCAGCCTCATCCACATTTGAGACCCCCCATGTCACAGATCGTAGCTCTGTTAACATTCAAAATCGATATGGTTACAACACCAATGAGGCCAGCTTTCCTCGACCGACGGCGCATAAAGGATGAAGCTGAGATCAACCATTCTTTTGAAATAATATCTGAGGCCACTGATTCAATTTCTATCAGATAA 1299 0.4234 MRKGWREDDFHDAPSLESQIPSSRYKHETLFFVLGGIVVVAILFILWFVFRKRIKQPTKPKGKTAPSKEHKEVMKMVFPSKQQSGSKSMSMEFFSGNLQSICFFDYQTLRKATHNFFPGNLLGSGGYGPVYRGKLVDGRMIAVKTLSHNKSQQGEREFLAEVKMITSIQHKNLVRLLGCCIDGPQRILVYEYMKNRSLELFIYGNGDQFLNWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDDKFQPRIGDFGLARFFPEDQDYLSTQFAGTLGYTAPEYATRGELSEKADIYSFGVLLLEIICCRKNTIRTLPSEMQYLPEYAWKLYEKSSILDIVDPKLRREHGFVEKDVMQAIHVAFLCLQPHPHLRPPMSQIVALLTFKIDMVTTPMRPAFLDRRRIKDEAEINHSFEIISEATDSISIR* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2070 432 Pfam Protein tyrosine and serine/threonine kinase 120 387 IPR001245 GO:0004672|GO:0006468
Lja6g2070 432 PANTHER RECEPTOR-LIKE KINASE 95 403 - -
Lja6g2070 432 ProSiteProfiles Protein kinase domain profile. 116 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2070 432 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 95 403 - -
Lja6g2070 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Lja6g2070 432 Gene3D Transferase(Phosphotransferase) domain 1 193 396 - -
Lja6g2070 432 CDD STKc_IRAK 122 389 - -
Lja6g2070 432 Gene3D Phosphorylase Kinase; domain 1 74 192 - -
Lja6g2070 432 SMART serkin_6 116 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2070 432 SUPERFAMILY Protein kinase-like (PK-like) 89 391 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2070 Lja-Chr6 49180799 49184751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2070 104 392 Receptor kinase-like Gene Family AT1G53430 50.515 7.47e-96 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g2070 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2070 - - gmx:100799624 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2070 6 49180799 49184751 Lja6g2070 6 49180799 49184751 ECH
Lja4g1587 4 14830337 14833374 Lja6g2070 6 49180799 49184751 PCT