Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2067 ATGACACCAACTTATCAGTATGAGGTATCTTCTATGCCTTTTGATCTTAATTATGAAGATCACAGTCACCAGCTCTTCAATACAAACCATGATCAAGCCTCTTCTTCATTATCATGTTCTACGCTCTACAACCCGGATCAAGATCAAGAAGCTAGATCTTACTACATGGAACCACAGCCCTTACAAAGTGATCATCAAGAGGCAGAGAAGGCTGTTCCTTCTAGCGGATCATGGGATCATCCAGCAGTTGAAAAGGATGAAAACTACAGAAGTGACCTCAAGCTGAGTACTGTCCGGAAGAAATTAGAAAATGGGAATGAAAATCTTCAAGGTGATCATCATCAGGAGGATAGTTCAGCAAAGTGGATGCCTTTAAAGATAAGAATGAAGCGGAGACTGATGGTATCGGATCAAACGAGTTCTGATCACGCCATAGCAGGAATCCAAAGCACTGATGAGCATAAGCAAGAAAATCAAAAGCTACCATTACCACAACATCTAAGAAGTACTGACAATAGCAGCTGCAACATTCCTTCAAACAACAACAGTAATATCCCTGCTGTTAGGGTTTGTGCTGATTGCAACACCACCAAGACCCCTCTCTGGAGGGGTGGACCAAGAGGTCCCAAGACACTTTGCAACGCCTGTGGGATTCGACAAAGGAAAGCGAGACGTGCCCTTGCCGCCGCTTCTACTGCTGCTGCAAATGGCGCCCCTCTCATGGCGGCAGCTGATCAGAAACCTCATGTGAAGAGAAATCACAAGTTGCAAATCAAAGGGAAGAAGTCCAAAACTGAGTTGAAAAAGAAGCCTAACCTTGGAGGGGGAGGTACAAAGAAGCTTGGTTCCGAGGAATTGACAATAAGCTTGAGTAAGAGCTTGGCTTTGCCACAGGATGAGAAGGATGCTGCAATCTTGCTCATGGCTTTGTCTCATGGCCTGCTTCATGGCTTCCCCTCACATCGTTACTTAGATTTATAA 981 0.4475 MTPTYQYEVSSMPFDLNYEDHSHQLFNTNHDQASSSLSCSTLYNPDQDQEARSYYMEPQPLQSDHQEAEKAVPSSGSWDHPAVEKDENYRSDLKLSTVRKKLENGNENLQGDHHQEDSSAKWMPLKIRMKRRLMVSDQTSSDHAIAGIQSTDEHKQENQKLPLPQHLRSTDNSSCNIPSNNNSNIPAVRVCADCNTTKTPLWRGGPRGPKTLCNACGIRQRKARRALAAASTAAANGAPLMAAADQKPHVKRNHKLQIKGKKSKTELKKKPNLGGGGTKKLGSEELTISLSKSLALPQDEKDAAILLMALSHGLLHGFPSHRYLDL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2067 326 ProSiteProfiles GATA-type zinc finger domain profile. 189 221 IPR000679 GO:0006355|GO:0043565
Lja6g2067 326 MobiDBLite consensus disorder prediction 60 92 - -
Lja6g2067 326 MobiDBLite consensus disorder prediction 255 281 - -
Lja6g2067 326 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Lja6g2067 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 224 - -
Lja6g2067 326 Gene3D - 187 272 IPR013088 GO:0006355|GO:0008270
Lja6g2067 326 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 317 - -
Lja6g2067 326 CDD ZnF_GATA 190 218 IPR000679 GO:0006355|GO:0043565
Lja6g2067 326 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 317 - -
Lja6g2067 326 SMART GATA_3 185 236 IPR000679 GO:0006355|GO:0043565
Lja6g2067 326 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2067 Lja-Chr6 49164322 49166620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2067 119 317 C2C2-Gata Transcription Factor Family AT4G26150 33.043 2.53e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja6g2067 GATA 3.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2067 - - gmx:100792098 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2067 6 49164322 49166620 Lja6g2067 6 49164322 49166620 ECH
Lja4g1581 4 14799681 14802060 Lja6g2067 6 49164322 49166620 PCT