Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2054 ATGGAAGGTGTCTTCTCCCTCCCTGCAGCCGCCAGAATTGATTTCATCCACTCTCTGGTGCAGTCTTTTGGCGGCTCATACATTTGCCTATGGTCACATGATGCCATGTCACCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTAAGCAACATTAGCCAACCAAGCTCTTCCCTTGGGACTCTGGCACCACAGCTTTTCAACCAGTTCCAGAGTTTAACATTTGATGTCAATGATGACCGTGTCCCTGGACTAGCTTTTAGGAATCAGTGGCCCTACCTAGAGCTGCAACAATTAGAACTTCTGAGACTGGCATCCACAGAGTTACAAGCACAATTCTATCAAGAAGCAAGGATCAAGACTGCTGTTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCTCAAGCAGACCTTCAAACAGCACTTAGGAGTTTGTTTCCAGAAGACTTTTCTAGACAAACCCAGCAAATTGATCATAATAATCCACCAACATCATCTTCATCTTCTTTAAGATCACCATCCACAGGCAGCCCTGAATACTCATCTCTGTTATTCAACAATATTCCAGGCACTTCTTCTCAACCCCATTTTCCTGAGACCCTTAGAGGAGCTCTGCCTCCAATAAACCCATCCACAAGCCCCCACCACCACCACCACCAACAACAAGCCATTCAACTCCAAGCACTGGCTCAAACCACTCCAATTCAATTCCCTACTACTCCAAATATTGAACATGATGCAATAATGAGAGCAATCCTCAATGTTATATCTCCTGTACCCTCTCAGCAGCAGAACTTGCCTTACATGGTGCATCCAGAAGCTACTGCTTTCATGAGGTATAGTAATAGACCTGATCATATCACATCCTCCCAAATGGGGTCCAATCTCAGAAGGCAAAGCTTGATGAAGAGATCATTTGCATTCTTTAGAAGCTTGAACTTTGTGAGAATGAGAGAAAGGAATCAAGCAACGCGTCCCTCTAGCACCCAGCTGCATCATATGATCTCAGAGAGAAGAAGGCGTGAGAAGCTGAATGAGAATTTTCAAGCACTCAGAGCACTGCTTCCTCCAGGAACTAAGAAAGACAAAGCTTCCATTCTGATAACAGCAAAGGAGACATTGAGCTCTTTGTTAGCTGAAATTGACAAGCAAGCCAAAAGAAATCAGGAGCTGACGTCACTATTTCCAGCCAAAGAATCTACAACTGAAGGAACCAAAGCCACCCTATCATCATCATCAAATGAAAGATTCAGTGTCCAAGTTTCAAATGTACTAGAATCAAGCTCATCTGAAGAGAGAACGGTGGACTTGCAAGTGAATTTGAGAGGACAAATTTCTCAAGCTGATGTGTTGATTCGATTATTGGAATTCTTAAAACAGGTTCACCATGTGAGCTTGATTTCCATGAGCACAAATGCAGAAGGGAATGCCATTCATCAACTAACCTTCAGGCTAAGGATTATTCAGGGAAGTGAATGGGACGAGCTTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTGCCAAGTGGACCAATAG 1572 0.4383 MEGVFSLPAAARIDFIHSLVQSFGGSYICLWSHDAMSPNRLSFLDGFYNVSNISQPSSSLGTLAPQLFNQFQSLTFDVNDDRVPGLAFRNQWPYLELQQLELLRLASTELQAQFYQEARIKTAVFMGCNKGEIELGFLNMSQADLQTALRSLFPEDFSRQTQQIDHNNPPTSSSSSLRSPSTGSPEYSSLLFNNIPGTSSQPHFPETLRGALPPINPSTSPHHHHHQQQAIQLQALAQTTPIQFPTTPNIEHDAIMRAILNVISPVPSQQQNLPYMVHPEATAFMRYSNRPDHITSSQMGSNLRRQSLMKRSFAFFRSLNFVRMRERNQATRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLLAEIDKQAKRNQELTSLFPAKESTTEGTKATLSSSSNERFSVQVSNVLESSSSEERTVDLQVNLRGQISQADVLIRLLEFLKQVHHVSLISMSTNAEGNAIHQLTFRLRIIQGSEWDELAFQEAVRRVVADLAQCQVDQ* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2054 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Lja6g2054 523 Coils Coil 381 401 - -
Lja6g2054 523 Pfam Helix-loop-helix DNA-binding domain 339 384 IPR011598 GO:0046983
Lja6g2054 523 Coils Coil 341 361 - -
Lja6g2054 523 CDD bHLH_AtbHLH_like 340 374 IPR045239 -
Lja6g2054 523 MobiDBLite consensus disorder prediction 161 205 - -
Lja6g2054 523 MobiDBLite consensus disorder prediction 161 231 - -
Lja6g2054 523 Gene3D - 334 408 IPR036638 GO:0046983
Lja6g2054 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 398 IPR036638 GO:0046983
Lja6g2054 523 SMART finulus 341 390 IPR011598 GO:0046983
Lja6g2054 523 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 516 - -
Lja6g2054 523 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 516 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2054 Lja-Chr6 48980096 48983954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2054 12 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.558 2.25e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g2054 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2054 - - lja:Lj6g3v1239580.1 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2054 6 48980096 48983954 Lja6g2054 6 48980096 48983954 ECH
Lja4g1566 4 14628564 14631947 Lja6g2054 6 48980096 48983954 PCT