Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2053 ATGGCCAAGAAGGCGAACAAAGCGATGAACAAGAGTTTGAAAAGGGTCACTGCTATTAATAAACCATCTGAGGGTCCTGATTTTTTGCCTTTGGAAGGTGGTCCTGCTCGTAAACTTCCTGAACAGAAACCGTTGGAGAATAAGGGCAGGGTCTTGTATGTTGGTCGGATTCCGCATGGGTTCTATGAGAAGGAGATTGAAGGTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTGCCAGAAACAAAACGACTGGAAAATCAAGACATTTTGGGTTCATAGAATTCGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTACTATTTGAACACCTTCCAGGTTCATGTGATACCTCCAGAGCATGTTCATTCAATGTTATGGAGAGGATTCAATTACCGTTACAAGCCATTGGACTCGGTCCAAATGCAGCGGGAGCGACATGA 468 0.4231 MAKKANKAMNKSLKRVTAINKPSEGPDFLPLEGGPARKLPEQKPLENKGRVLYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLPGSCDTSRACSFNVMERIQLPLQAIGLGPNAAGAT* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2053 155 CDD RRM_NIFK_like 51 120 - -
Lja6g2053 155 SUPERFAMILY RNA-binding domain, RBD 35 118 IPR035979 GO:0003676
Lja6g2053 155 Gene3D - 2 128 IPR012677 -
Lja6g2053 155 MobiDBLite consensus disorder prediction 1 42 - -
Lja6g2053 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 116 IPR000504 GO:0003723
Lja6g2053 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 137 IPR000504 GO:0003723
Lja6g2053 155 SMART rrm1_1 51 125 IPR000504 GO:0003723
Lja6g2053 155 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 120 - -
Lja6g2053 155 PANTHER - 6 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2053 Lja-Chr6 48976385 48978869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2053 52 120 Eukaryotic Initiation Factors Gene Family AT1G71770 31.884 1.41e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2053 K14838 - gmx:100814276 196.438