Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2049 ATGGACTTGAGAAGTGGTTTCTCGGATTCAAACGAATTCAGCAACGGCAGTACCATGTACAACAACAGCAGCAGCAATGGTGAAGCCCGTTCCAATAATTCTTCAGATATCACCCCACTGAAGCGCCTCTCCGAGAACCTGGGCTCAATCTTGGAGGCCTCCACAGCGTCTAACTTCTTTGCCGATGCAAAGATCGTGGCCGCGGACGGCCGTGAATTGACCGTGCACCGATGCATTCTGGCGGCCAGGAGTGGTTTCTTCAAGGATGTGTTTTGTGCGAAAGAGAGGAGCACTGTGATGCTCCAAATGAAGGAAGTGGCTAAGGATTATGATGTTGGGTTGGATGCACTTGGAGCTGTTCTGGGTTATTTGTATAGTGTTGGTGTTTGTGCTTGTGTTGATGATGATTGCTCCCATCTTGGTTGCTGGCCTGCTCTAGATTTTATGCTTCAGCTGCTCTATGCTTCCTCTCTATTTTGCATCATTGAGTTAGTTTCTCTTTATCAGGGACATCTACTAAACATTCTTGACAAGGTGGCAACAGATGACATTTCAGTGGTTCTCTCTGTTGCAAATAAATGTGGTAAAACATGTGACAGGTTGCAAGCAAGGTGTACTGAGATGATAGTTAAATCTGATGCTGACATTATCACTCTGGAAAAATCACTGCCTCAAACCATAGTGAAACAAATCATGGATAAACGTAAAGAACTGGGTTTAGACAGGCCTGAAAACCTCAATTCTCCGGATTACAAGCATGTCAGCAGAATACACAGGGCTCTGGATTCAGATGATGTGGAATTAGTAAGGTTGCTTCTGAAAGAGGGACATACTACTCTAGATGAGGCCTATGCTCTTCACTATGCTGTTGCATACTGCGACGTGAAGACCGCCGCTGAGCTTCTTGATCTTGGACTCGCGGATGTCAACCACAAAAACCGTAAGGGCTATAGTGTGCTGCATGTTGCTGCCATGAGGAAGGAGCCTAAGATTATAGCGTCTCTCTTGACAAAAGGAGCTCAGCCTTCTGAGCTCACTTTGGATGGTAGAAAAGCGCTTCAGATTTCAAAGAGTCACACCAAAGTTGTGGATTATCATAATAAATCAACAGAGGAAGGAAATGCATCATCATCGAAAGATAGATTGTGCATAGAGATATTGGAGCAAGCTGAGAGAAGAGAGCCTTTACTAGGGGAGGCATCTCATTCTCTTGCTATGACAGGGGATGATTTCCGTATGAAATTGTTGTACCTAGAAAACAGAGTTGGACTTGCAAGGCTTCTGTTTCCCACGGAAGCAAAGGTTGTGATGGACATTACTCAATATGATGGCACACCTGAATTTCCAACACCAGACATCTACCCTCCAAACATAAGTGGTTGCCAGAGGAAAACTATGGACTTAAATGAGGCACCTTTTAAAATAAAGGAGGAGTATTTAGCTAGGATGAGAGCACTGTCTAAAGCTGTGGAGGTGGGGAAACGTTTCTTTCCTCGTTGCTCTGAAGTTTCAAATAAGATCATGGATGCTGATGACCTATCTCAGCTTGCATGTATGGGTAATGACAGTCCTGAAGAACGAGTAGCAAAGCGAAGACGGTATATGGAACTCCAAGAAGTTCTTAACAAGGTCTTCCATGAGGATAAAGAGGAGTTTGATAGATCTGGCATCTCATCATCATCCTCTTCCACGTCAAGGATAATTTAG 1707 0.4429 MDLRSGFSDSNEFSNGSTMYNNSSSNGEARSNNSSDITPLKRLSENLGSILEASTASNFFADAKIVAADGRELTVHRCILAARSGFFKDVFCAKERSTVMLQMKEVAKDYDVGLDALGAVLGYLYSVGVCACVDDDCSHLGCWPALDFMLQLLYASSLFCIIELVSLYQGHLLNILDKVATDDISVVLSVANKCGKTCDRLQARCTEMIVKSDADIITLEKSLPQTIVKQIMDKRKELGLDRPENLNSPDYKHVSRIHRALDSDDVELVRLLLKEGHTTLDEAYALHYAVAYCDVKTAAELLDLGLADVNHKNRKGYSVLHVAAMRKEPKIIASLLTKGAQPSELTLDGRKALQISKSHTKVVDYHNKSTEEGNASSSKDRLCIEILEQAERREPLLGEASHSLAMTGDDFRMKLLYLENRVGLARLLFPTEAKVVMDITQYDGTPEFPTPDIYPPNISGCQRKTMDLNEAPFKIKEEYLARMRALSKAVEVGKRFFPRCSEVSNKIMDADDLSQLACMGNDSPEERVAKRRRYMELQEVLNKVFHEDKEEFDRSGISSSSSSTSRII* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2049 568 ProSiteProfiles Ankyrin repeat region circular profile. 315 341 - -
Lja6g2049 568 Pfam Ankyrin repeats (3 copies) 258 342 IPR002110 GO:0005515
Lja6g2049 568 Gene3D - 211 445 IPR036770 -
Lja6g2049 568 SUPERFAMILY POZ domain 40 174 IPR011333 -
Lja6g2049 568 Pfam BTB/POZ domain 55 169 IPR000210 GO:0005515
Lja6g2049 568 SMART ANK_2a 315 344 IPR002110 GO:0005515
Lja6g2049 568 SMART ANK_2a 281 311 IPR002110 GO:0005515
Lja6g2049 568 SMART ANK_2a 252 280 IPR002110 GO:0005515
Lja6g2049 568 SMART BTB_4 61 176 IPR000210 GO:0005515
Lja6g2049 568 Pfam NPR1/NIM1 like defence protein C terminal 357 564 IPR021094 -
Lja6g2049 568 Gene3D Potassium Channel Kv1.1; Chain A 25 210 IPR011333 -
Lja6g2049 568 SUPERFAMILY Ankyrin repeat 240 358 IPR036770 -
Lja6g2049 568 MobiDBLite consensus disorder prediction 7 36 - -
Lja6g2049 568 PANTHER REGULATORY PROTEIN NPR2 4 565 - -
Lja6g2049 568 MobiDBLite consensus disorder prediction 1 36 - -
Lja6g2049 568 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Lja6g2049 568 CDD BTB_POZ_NPR_plant 41 176 - -
Lja6g2049 568 ProSiteProfiles BTB domain profile. 61 126 IPR000210 GO:0005515
Lja6g2049 568 PANTHER REGULATORY PROTEIN NPR3 4 565 IPR044292 GO:0009862|GO:2000022|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2049 Lja-Chr6 48946953 48949112 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja6g2049 NPR1_like_C 1.9e-82 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2049 K14508 - gmx:100800032 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2049 6 48946953 48949112 Lja6g2049 6 48946953 48949112 ECH