Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2037 ATGGAGAATCATCGCAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTTGTGCAGGTTAAGGAGGAGGATGATAAGGTGGCTGGTGAAGAGGAGGAGGTGGTGGATGGAGACGAAATAGGTTCAAGCTTGACCATGGAGAGGGTGGCTGCAGCTAAGAAATTCATTGAGAGCCATTACAAGTCTCAGATGAAGCACATCCAAGAACGCAAGGAGAGGCGTTCTGTGCTACAAAAGAAGTTAGAGTCTTCCCATGTACCGGAAGATGAACAGATGGATCTACTGAAAGATTTAGAGCGCAAGGAGACCGAGTATATAAGGTTAAAAAGACATAAAATATGTGTTGAGGATTTTGACCTTCTATCCATCATAGGCAGGGGAGCCTTTGGAGAGGTAAGACTCTGTCGAGAGAAGAAATCGGGTAACATCTATGCCATGAAAAAATTGAAAAAGTCTGAAATGCTTAGTAGGGGACAGGTTGAGCATGTCAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCAATGATTGCATCGTGAAACTGTATTACTCCTTTCAGGATGCAGACCACTTATATCTTATAATGGAATATTTACCTGGAGGTGACATAATGACTTTGTTGATGAGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCCCAAAGCGTTTTAGCCATAGAGTCTATTCATAAACACAACTACATTCATCGGGATATAAAACCAGACAACCTTCTATTGGACAAAAACGGTCATATGAAACTGTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCGAATCTTTCATCTATAAATGAAAATGAAATATTGGATGATGACAAAAACTTGAATGATACCATGGATGCTGATGGAGCCTGCCAAAATGGCCAAGGTGGTAGGCGCTGGAAAAGTCCCTTTGAACAACTTCAACATTGGCAAATAAACAGGAGGAAGTTGGCATTTTCTACTGTTGGAACTCCAGACTACATTGCTCCAGAAGTGTTACTGAAAAAGGGTTATGGTGTGGAGTGCGACTGGTGGTCTCTTGGTGCAATAATGTATGAGATGCTTGTTGGTTATCCCCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATTGTGCACTGGAAGAATCATTTAAAATTTCCAGATGAGGCAAGATTGACGCCTGAAGCAAAGGATCTAATATGCAGGTTGCTTTGTGGCGTTCAACATAGGCTTGGAACCGGAGGGGCAGATGAAATTAAAGCTCATCCTTGGTTTAAAGATATCGCGTGGGACAGGCTCTATGAAACCGAGGCAGCATTCAAACCACAAGTCAATGGGGAGCTTGACACTCAGAATTTTATGAAATTTGATGAGGTTGAACAACCAAAACCAAGCAGATCTGGATCTGGCCAACTGAGAAAGAAGCTCTTAACTCCTCAAGATCTCAGTTTTGTTGGCTATACATATAAGAATTTTGCTGCTATCAAGGGGATGAATCTTTCTACTGATAAAGGGAGCTTGTCAACAACACAGAGGCCCTCATCAGTTGAATCCTCCTCTCACAGTGATTCTGCAATCAATTATTCCACCTGA 1602 0.4238 MENHRKEEEEEEEEEEEEVVQVKEEDDKVAGEEEEVVDGDEIGSSLTMERVAAAKKFIESHYKSQMKHIQERKERRSVLQKKLESSHVPEDEQMDLLKDLERKETEYIRLKRHKICVEDFDLLSIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVANDCIVKLYYSFQDADHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLSSINENEILDDDKNLNDTMDADGACQNGQGGRRWKSPFEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEARLTPEAKDLICRLLCGVQHRLGTGGADEIKAHPWFKDIAWDRLYETEAAFKPQVNGELDTQNFMKFDEVEQPKPSRSGSGQLRKKLLTPQDLSFVGYTYKNFAAIKGMNLSTDKGSLSTTQRPSSVESSSHSDSAINYST* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2037 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Lja6g2037 533 CDD STKc_NDR_like 118 493 - -
Lja6g2037 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 524 - -
Lja6g2037 533 Pfam Protein kinase domain 321 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2037 533 Pfam Protein kinase domain 122 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2037 533 SMART pkinase_C_6 429 494 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja6g2037 533 ProSiteProfiles AGC-kinase C-terminal domain profile. 429 502 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja6g2037 533 MobiDBLite consensus disorder prediction 1 40 - -
Lja6g2037 533 Coils Coil 1 26 - -
Lja6g2037 533 ProSiteProfiles Protein kinase domain profile. 120 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2037 533 SMART serkin_6 120 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2037 533 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 28 524 - -
Lja6g2037 533 MobiDBLite consensus disorder prediction 506 533 - -
Lja6g2037 533 Gene3D Transferase(Phosphotransferase) domain 1 206 445 - -
Lja6g2037 533 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lja6g2037 533 SUPERFAMILY Protein kinase-like (PK-like) 103 472 IPR011009 -
Lja6g2037 533 Gene3D Phosphorylase Kinase; domain 1 111 205 - -
Lja6g2037 533 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2037 Lja-Chr6 48443818 48451209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2037 12 532 AGC Kinase Gene Family AT2G19400 72.901 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lja6g2037 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2037 K08790 - gmx:100811359 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2037 6 48443818 48451209 Lja6g2037 6 48443818 48451209 ECH