Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2034 ATGGAGGAAATAACTTCGGCGGTTGCAGTGCCAGTTACACTTGGGAATTTAATCCAGAAGGAGACAGTGGAGCTAACTGGTTTAAAGCTCATGGCAAATACTGCAGCAGCTTTAATATTAAATCCTGCAACTGAGGGTTCTCAATCCTTCTCTGTTGCTTGTGAAGACGACATAAGGGTCAGTCCACAACATCCAATCACAGTATCTGCAGAGTTCAAGGAGATTCAGATTGGAGCTGACCTTGTCTCAGAAATGGTTATTGAAGGCCAAAGTAATAAGCATCATGCTGAAAGCCATAACCAGGCAATAAATGAAGATGAATCTGTTGTTAGTGAGAAAAGCAGTACTTGTAGGGAGGAATCTACTATTTTAAGGACTAATTGTTATGAAATGAGTTCACCAAATACCATCAAGGTTGATGATAAAATCCATGGTGAGTCTAGTTTGGCCGAGACGCGTGCAGAGCTAGAGCCAGTGCAGAACTTGGTTTCTGTGGCTGTGGAGCTTGATACTGAAGATGGAAGTGGGTCAGATGGGTCTGATCCAAAACCATTTGTTGCAGTTCATGAGATGCCAGAGAAGCAACCTTGCAGAACAAGCTGCCAGAATGCATTGGAATTGAGTGGCACTCCTCTTTGGGGGTTTTCATCAGTGTGTGGAAGGAGACAGGAGATGGAAGATGCTGTTGCTGTTAAGCCTCAAATTTTTGAAGTCCCTTCATGGATGCTAATGGATAAACATGTGAATGAAACCGACGAATACACATCACTGGCACACTTTTTCGGCGTCTATGATGGACATGGGGGCTCTCAGGTTGCCAATTACTGCCAGGAACATCTCCATTCAGTGTTGATTGAGGAGATAAAAGCTGCAGAATCAAGTTTGGCTGAAGAAAATGGGAGAGATAACTTGCAAGAGCAATGGAACAAAGCATTCTCAAATTGCTTCCACAAAGTAGATGATGAGATTGGACGAGTTCATTCAGGTAATGGTGGAAGGAACATTGATGATGGATCTGAGTCAAGCATGGAAGAGCCTCTTACTCCTGAGACTGTTGGATCCACTGCAGTGGTTGCCATTTTGACTCAAACCCACATAATAGTTGCAAATTGTGGCGACTCAAGAGCAGTCTTGCGTCGCGGAAAGGAAGCGCTGCCATTGTCTACTGATCACAAACCAAATCGAGAAGACGAGTGGGCAAGGATAGAAGCTGCAGGAGGAAGGATCATACAATGGAATGGGTACCGAGTTCTGGGTGTTTTAGCCGTGTCAAGGTCCATAGGTGATAGATACTTGAAACCGTGGATAATTCCAGACCCAGAAGTCAAGTGCCTCCTTCGGGAGAAAAACGATGAGTGCCTTATTCTGGCAAGTGATGGTTTATGGGATGTCATGACAAATGAAGAGGCCTGTGACATGGCACGGAAGAGAATCCTTCTTTGGCATAAGAAGAATGGCGATAACATGTCAAGAGAACAAGGCCAAGGAGTTGATCCTGCAGCTCAGTCTGCTGCAGATTATTTATCTAGACTTGCCATTCAAAGGGGAAGCAAAGATAATATCTCTGTTATTGTTATAGATTTGAAGGCTCAAAGACAATTCAAGAGAAAAGCATAA 1617 0.4385 MEEITSAVAVPVTLGNLIQKETVELTGLKLMANTAAALILNPATEGSQSFSVACEDDIRVSPQHPITVSAEFKEIQIGADLVSEMVIEGQSNKHHAESHNQAINEDESVVSEKSSTCREESTILRTNCYEMSSPNTIKVDDKIHGESSLAETRAELEPVQNLVSVAVELDTEDGSGSDGSDPKPFVAVHEMPEKQPCRTSCQNALELSGTPLWGFSSVCGRRQEMEDAVAVKPQIFEVPSWMLMDKHVNETDEYTSLAHFFGVYDGHGGSQVANYCQEHLHSVLIEEIKAAESSLAEENGRDNLQEQWNKAFSNCFHKVDDEIGRVHSGNGGRNIDDGSESSMEEPLTPETVGSTAVVAILTQTHIIVANCGDSRAVLRRGKEALPLSTDHKPNREDEWARIEAAGGRIIQWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVKCLLREKNDECLILASDGLWDVMTNEEACDMARKRILLWHKKNGDNMSREQGQGVDPAAQSAADYLSRLAIQRGSKDNISVIVIDLKAQRQFKRKA* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2034 538 SUPERFAMILY PP2C-like 211 529 IPR036457 -
Lja6g2034 538 MobiDBLite consensus disorder prediction 91 116 - -
Lja6g2034 538 ProSitePatterns PPM-type phosphatase domain signature. 260 268 IPR000222 GO:0043169
Lja6g2034 538 Gene3D - 200 538 IPR036457 -
Lja6g2034 538 ProSiteProfiles PPM-type phosphatase domain profile. 212 528 IPR001932 -
Lja6g2034 538 MobiDBLite consensus disorder prediction 327 347 - -
Lja6g2034 538 PANTHER ALPHABET, ISOFORM E-RELATED 110 537 - -
Lja6g2034 538 Pfam Protein phosphatase 2C 215 521 IPR001932 -
Lja6g2034 538 SMART PP2C_4 202 526 IPR001932 -
Lja6g2034 538 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 110 537 - -
Lja6g2034 538 CDD PP2Cc 214 528 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2034 Lja-Chr6 48422006 48425138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2034 101 538 PP2C-type Phosphatase Gene Family AT1G17550 50.000 1.16e-141 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2034 K14497 - gmx:100812974 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2034 6 48422006 48425138 Lja6g2034 6 48422006 48425138 ECH
Lja4g1548 4 14472718 14475406 Lja6g2034 6 48422006 48425138 PCT