Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2033 ATGAAGAAAGGATGCTTAGGCCCCAGTCTGAAACTCAAAGTTCCTGCATCTACTCAGGCTTCTTTTGCCAAATACCTGACTCAAAGCGGAACGTTTAAGGATGGGAATCTGCTTGTCAACAAGGATGGCGTTCAAATTGTTCCTCAGAGTGAAGTAGAAGCTCGACCCCCAATCAGGGCGCTAGACAACCAGTTAAATTTGGCAGACTTTGATAGAATCAAAGTGATTGGAAAGGGAAATGGCGGGATAGTGCAGTTGGTGCAACACAAATGGACTAATCAGTTTTTTGCTTTAAAGCAAATTCAAATGAAGATTGAAGAGTCTATGAGCAGGCAGATAGCTCAAGAGCTAAAAATCAATCAGTCATCACAGTGTCCTTATGTTGTTGTCTGCTACCAATCCTTCTATGTGAATGGTGTCATTTCAATCATCTTTGAGTACATGGACGGAGGGTCTTTAGATGATCTTCTGAACAATGTTAAAACGATTCCAGAACCATATCTTGCTTCCATCTGCAAGCAGGTACTGAAGGGTTTAATGTATCTTCACCATGAAAAGCATATTATCCACAGGGACTTGAAACCTTCTAATCTGCTCATTAATCATAGAGGGGAGGTAAAAATTACAGACTTTGGTGTGAGTGCAATCATGGAAACTACATCTGGCCAAGCAAATACTTTCATTGGCACATATGTCTATATGTCTCCAGAGAGAATCAATGGAAGCCAGGATGGCTACAACTACAAAAGTGATATATGGAGCTTGGGACTGATGTTTCTCAGGTGCGCTACGGGGATGTTTCCGTATACACCACCCGATCAAAGTGAAGGGTGGGAGAATATATACCAGCTTATTGAAGCCATTGTCGAAAATCCTTCACCTAGCGTTTCATCTGATGAGTTTTCTTCAGAATTTTGCTCATTTATTGCAGCATGTTTACAGAAAAATCCAAAGGATCGACCATCGGCTCCAGAACTTATGAGACATCCTTTTATCAACATGTATGACGACTTGGCTGTGGACCTTTCAGCTTATTTCTCCAATGCAGGACCTACATTTGCAACCATATAA 1071 0.4127 MKKGCLGPSLKLKVPASTQASFAKYLTQSGTFKDGNLLVNKDGVQIVPQSEVEARPPIRALDNQLNLADFDRIKVIGKGNGGIVQLVQHKWTNQFFALKQIQMKIEESMSRQIAQELKINQSSQCPYVVVCYQSFYVNGVISIIFEYMDGGSLDDLLNNVKTIPEPYLASICKQVLKGLMYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMETTSGQANTFIGTYVYMSPERINGSQDGYNYKSDIWSLGLMFLRCATGMFPYTPPDQSEGWENIYQLIEAIVENPSPSVSSDEFSSEFCSFIAACLQKNPKDRPSAPELMRHPFINMYDDLAVDLSAYFSNAGPTFATI* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2033 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lja6g2033 356 PANTHER MAP KINASE KINASE 1 356 - -
Lja6g2033 356 SUPERFAMILY Protein kinase-like (PK-like) 66 340 IPR011009 -
Lja6g2033 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
Lja6g2033 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lja6g2033 356 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2033 356 CDD PKc_MAPKK_plant_like 68 336 - -
Lja6g2033 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Lja6g2033 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2033 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2033 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2033 Lja-Chr6 48418143 48422012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2033 27 350 MAP Kinase Kinase Gene Family AT4G26070 66.049 2.04e-161 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lja6g2033 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2033 K20603 - gmx:100789734 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2033 6 48418143 48422012 Lja6g2033 6 48418143 48422012 ECH
Lja4g1547 4 14467385 14472227 Lja6g2033 6 48418143 48422012 PCT