Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2026 ATGATCGTTTCACCGAAGAACCGCCGGAGCGTGGAGGAGGTTTTTAGGGACTACTGTGGCCGCCATTCCGCCATTGTCAAAGCCCTCACCACTGTCAATATTATTGAATTAATTAACCTTGATGTTTATATGAGGTGTGAGTTTGATAGGATGTGTCAAGACAACCTTTGTCTGTTTGGACATGCCAACGGAGATTGGGAGCTCGGTTTTCCTGCTGAAGATGTTCCAACTGAACTTCCAGAACCTGTAGTGGGCATCAATTTTGCCAGGGATGGCATGAAAGAAAAGGATTGGCTACTTTTAGTTGCTGCTCACAGTGATGCATGGCTGCTTTCAGTGGCTTTCTACTTTGGAGGAAGATTTGGTTTTGGCAGTGTTAAAAGGAAACGCCTGTTCGCTATGATTAATGAGTTGCCGACCGTATCTGAGATGGTGACCGGAACTTTAAAGGCTAAGGCCAAATCTTCAGGCTCAACTAGCAACAACACCAAGAAAGACAAGTCCGGTTCCAAAGGGGGAGGATCTGCATCGGGGAAAAAATCAAAGAAAGGGAAGGAGGAGGAGGAGGAGGATTTGGATGAGAATGCGGATGCGGTTGCGATTGCGGATGCGGATGTGGATGAGGGATTTGATGGAAAATATAAGGAGGCGGATGGTGAGACTGAGACCTTATGCGGTGTGTGTGGCGAAGCTTATGAAACTAACCAGTTCTGGATCTGCTGTGACAAATGTGACAAGTGGTTCCATGGAAAATGTGTGAATGTCACTGAGGCCAGGGCTGATCACATTAAACAGTACAAGTGCCCCTCATGCAGCAAGAGGGGTCGCCATAACAACTCATCTTAG 846 0.4693 MIVSPKNRRSVEEVFRDYCGRHSAIVKALTTVNIIELINLDVYMRCEFDRMCQDNLCLFGHANGDWELGFPAEDVPTELPEPVVGINFARDGMKEKDWLLLVAAHSDAWLLSVAFYFGGRFGFGSVKRKRLFAMINELPTVSEMVTGTLKAKAKSSGSTSNNTKKDKSGSKGGGSASGKKSKKGKEEEEEDLDENADAVAIADADVDEGFDGKYKEADGETETLCGVCGEAYETNQFWICCDKCDKWFHGKCVNVTEARADHIKQYKCPSCSKRGRHNNSS* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2026 281 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 6 5 276 - -
Lja6g2026 281 PANTHER CPG BINDING PROTEIN 5 276 IPR045104 GO:0006355|GO:0042393
Lja6g2026 281 SMART PHD_3 224 272 IPR001965 -
Lja6g2026 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 279 IPR013083 -
Lja6g2026 281 Pfam Alfin 10 146 IPR021998 GO:0006355|GO:0042393
Lja6g2026 281 SUPERFAMILY FYVE/PHD zinc finger 217 274 IPR011011 -
Lja6g2026 281 MobiDBLite consensus disorder prediction 152 198 - -
Lja6g2026 281 CDD PHD_AL_plant 224 274 IPR044104 -
Lja6g2026 281 ProSiteProfiles Zinc finger PHD-type profile. 222 274 IPR019787 -
Lja6g2026 281 ProSitePatterns Zinc finger PHD-type signature. 225 271 IPR019786 -
Lja6g2026 281 Pfam PHD-finger 225 273 IPR019787 -
Lja6g2026 281 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2026 Lja-Chr6 48361748 48365637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2026 7 276 Alfin-like Transcription Factor Family AT3G42790 53.137 1.09e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja6g2026 Alfin 3.5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2026 - - lja:Lj6g3v1211470.1 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2026 6 48361748 48365637 Lja3g1555 3 17064288 17068213 ECH
Lja6g2026 6 48361748 48365637 Lja3g5002 3 92142885 92146695 ECH
Lja6g2026 6 48361748 48365637 Lja1g4011 1 50881578 50886504 ECH
Lja6g2026 6 48361748 48365637 Lja6g2026 6 48361748 48365637 ECH