Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2025 ATGAAGTCATTTCTCTTTATGAATCATTCTGAAACTGAGCCCAGTTATTCACAAGTTGATTGTAATAACTCAATGGCTCATGCTCCTTATCCATATGGTGAACCAATTTTTGCTGGTCCATTTGTTGCTTATGGACCACAGGATGTTAATCAACCCCAAATGTTGTTGCCTCATATGCTGGGATTGGCATCCACTAGAGTTGCATTACCACTTGATCTTGCACAAGATGGACCCATTTATGTCAATGCGAAGCAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCACAGAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGGTCTGGGGGGAGGTTCCTCAGCACGAAACAGCTTTCGCAGTCTAATGCAGAATTTGTCACTGGTGGGCATTCTGGCTCTGTCAATTTCAGCAGATATCAAGAGGATCCTTCAGAGCTGGAAAGACATTCCTCAAAAACTGGAGACAATGCATCTTCCATCACAACCTGCTCTGATCGGACATTTTTATCTGGTAATAGTGTCAATTTTAGGCAGCAAGAGCACATCTTTCTGGGGACCTCTGCAAACATGGGTGGAGCACCACAATGCAGTGCGGGACTCACCTTCGGTGGAACAAAGCAACACGCTTCGGTTGTCCGGTGA 702 0.4558 MKSFLFMNHSETEPSYSQVDCNNSMAHAPYPYGEPIFAGPFVAYGPQDVNQPQMLLPHMLGLASTRVALPLDLAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLSQSNAEFVTGGHSGSVNFSRYQEDPSELERHSSKTGDNASSITTCSDRTFLSGNSVNFRQQEHIFLGTSANMGGAPQCSAGLTFGGTKQHASVVR* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2025 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 216 IPR001289 GO:0003700|GO:0006355
Lja6g2025 233 Gene3D - 75 137 - -
Lja6g2025 233 MobiDBLite consensus disorder prediction 159 182 - -
Lja6g2025 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 78 132 IPR001289 GO:0003700|GO:0006355
Lja6g2025 233 ProSiteProfiles NF-YA/HAP2 family profile. 75 135 IPR001289 GO:0003700|GO:0006355
Lja6g2025 233 SMART cbf3 74 135 IPR001289 GO:0003700|GO:0006355
Lja6g2025 233 ProSitePatterns NF-YA/HAP2 subunit signature. 80 100 IPR018362 GO:0003677|GO:0016602
Lja6g2025 233 PRINTS CCAAT-binding transcription factor subunit B signature 78 100 IPR001289 GO:0003700|GO:0006355
Lja6g2025 233 PRINTS CCAAT-binding transcription factor subunit B signature 109 132 IPR001289 GO:0003700|GO:0006355
Lja6g2025 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2025 Lja-Chr6 48320777 48324900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2025 56 157 CCAAT-HAP2 Transcription Factor Family AT1G54160 63.462 7.80e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja6g2025 CBFB_NFYA 3.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2025 K08064 - gmx:100793856 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2025 6 48320777 48324900 Lja6g2025 6 48320777 48324900 ECH