Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2024 ATGCTTACATGCATAACTCGCCCCAAGAAACTCGCCGACGACGATTCTGACTCAGTGAACAACAACAACAACAGTGCAAAGAGTCATCACCATCATCATGGCGTCAAGTCACTCACTGATCAGATTAAGGACATGGCGCTCAAGGCGTCCGGAGCGTACAAGCACTGCACCCCCTGCGCGCCGCCGCAACCGCCGACACGACCCGGAGCGTCTGACTCGGAGCGGGTCCGGTGGGGGAAGGAGATGGAGGCGAGGCTGAAGGGGATCTCCAGCGGGGAGCTCACGCCGTGCTCTTCTTCATCATCCTCCGCCGCCGGGCGGAGGATGGTGGTGCTGATGGAGGACGAGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTTTTGATCACCTTTGTTTCGCTCCCGCGTGGCGGAAACGATCTCAAGCGGATACGCTTCAGCCGTGAGATGTTTAACAAATGGCAAGCTCAAAGATGGTGGGTAGAGAACTATGACAAGGTCATGGAACTTTACAATGTTCAAAGGATTAATCACCAAGCTTTCCCCCTTCCAACTCCAGCAAGGTCTGAAGAAGAGAGTTCAAAGCGTGAATCGATAGAAGACAGCCCTGTCACACCTCCACTGACGAGGGAAATGTTACCTCGTAGTTTATATCGCCCAACAGGGATGGGAACAGGATACTCATCCTCAGATTCTTTTGATCTTCAATCAATGCAGTCTCGGCATTACCATGATTCAAACGGTATGAGCTCAACCCCAGAGGTTTCCACCATAAGTGCTGCTAAGACTGATATATCATCAATGGATGCTTCTATAAGAAGCAGCTCGTCTAGAGAAGCTGATCACTCCGAGGACGTATCACTTAGCAATGCCAGTGACCTGGACACTGAATGGGTTGAGCAGCATGAACCTGGGGTTTACATTACCATCAGAGTTCTCCCAAGTGGCAAAAGGGAGCTCAAACGAGTCAGGTTCAGGAAATTCATTTGTTGGTGTTTCCTCATATGTGGTGCAGTCGAGAAAAATTTGGAGAAATGCATGCTAGACTATGGTGGGAAGAGAATCGCGCCAGAATACATGAACAATACCTGTGAGGTTTTCTACAATTGA 1116 0.5099 MLTCITRPKKLADDDSDSVNNNNNSAKSHHHHHGVKSLTDQIKDMALKASGAYKHCTPCAPPQPPTRPGASDSERVRWGKEMEARLKGISSGELTPCSSSSSSAAGRRMVVLMEDEEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWVENYDKVMELYNVQRINHQAFPLPTPARSEEESSKRESIEDSPVTPPLTREMLPRSLYRPTGMGTGYSSSDSFDLQSMQSRHYHDSNGMSSTPEVSTISAAKTDISSMDASIRSSSSREADHSEDVSLSNASDLDTEWVEQHEPGVYITIRVLPSGKRELKRVRFRKFICWCFLICGAVEKNLEKCMLDYGGKRIAPEYMNNTCEVFYN* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2024 371 MobiDBLite consensus disorder prediction 184 223 - -
Lja6g2024 371 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 329 IPR044532 -
Lja6g2024 371 MobiDBLite consensus disorder prediction 269 293 - -
Lja6g2024 371 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 329 - -
Lja6g2024 371 MobiDBLite consensus disorder prediction 1 38 - -
Lja6g2024 371 ProSiteProfiles BRX domain profile. 298 353 IPR013591 -
Lja6g2024 371 Pfam Transcription factor BRX N-terminal domain 24 59 IPR027988 -
Lja6g2024 371 Pfam Transcription factor regulating root and shoot growth via Pin3 119 173 IPR013591 -
Lja6g2024 371 Pfam Transcription factor regulating root and shoot growth via Pin3 298 329 IPR013591 -
Lja6g2024 371 ProSiteProfiles BRX domain profile. 119 174 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2024 Lja-Chr6 48312812 48317531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2024 1 329 Major Intrinsic Protein MIP AT1G31880 41.972 7.48e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2024 - - gmx:100794109 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2024 6 48312812 48317531 Lja6g2024 6 48312812 48317531 ECH
Lja4g1534 4 14297565 14303496 Lja6g2024 6 48312812 48317531 PCT