Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2020 ATGGGTGATGTTCTGAGTCCCTTCACAATCACAACCCCTCCTCCACCATCTTCCCCATCAAACGAGAACAACAGCATGGTCATACTATACTATGGTCTAGTGGTGGTGGGAACAGCAGCCATAGTGTTAGCCATCTACAACATCATCATCATCAAACGCTGCCACAACCGGCGCCACTCTAATCAGCCACCACAGCCAAATAGTTTGGTTGAAGGGGTCCCTGATAGTGAAAGCAGGAGCTTTGACAACCCACATAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAGGAAGTGATTTCAACAAAAGATTTAGAGGAACAACAACAAGGTGGGGTTGCTGGTGGCGGCGGCGGCGGTGGTGGTGATGATTATGATTGTGAATGCCCTGTTTGTTTATCAGTTTATGAAGAAGGGGAAGAGGTGAGGAAGCTGCCACGGTGCAAACACTCGTTCCATGCTCCTTGCATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGCAGAACACCGGTTGCTGTTGGTCCTATGTGTCATGGTTTTCCAGCAGAGGATTCTCGTGGTGAATCTGATGGTGTCCCTGTTTGA 591 0.4788 MGDVLSPFTITTPPPPSSPSNENNSMVILYYGLVVVGTAAIVLAIYNIIIIKRCHNRRHSNQPPQPNSLVEGVPDSESRSFDNPHRNLLSSFKYKKEVISTKDLEEQQQGGVAGGGGGGGGDDYDCECPVCLSVYEEGEEVRKLPRCKHSFHAPCIDMWLYSHFDCPICRTPVAVGPMCHGFPAEDSRGESDGVPV* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2020 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 175 IPR013083 -
Lja6g2020 196 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Lja6g2020 196 CDD RING-H2_EL5_like 127 170 - -
Lja6g2020 196 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 178 IPR044675 -
Lja6g2020 196 Pfam Ring finger domain 127 170 IPR001841 -
Lja6g2020 196 SUPERFAMILY RING/U-box 127 175 - -
Lja6g2020 196 MobiDBLite consensus disorder prediction 1 22 - -
Lja6g2020 196 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 178 - -
Lja6g2020 196 MobiDBLite consensus disorder prediction 57 84 - -
Lja6g2020 196 MobiDBLite consensus disorder prediction 60 74 - -
Lja6g2020 196 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2020 Lja-Chr6 48281486 48282669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2020 32 174 C3H Transcription Factor Family AT5G17600 34.868 6.37e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2020 - - aprc:113852327 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2020 6 48281486 48282669 Lja6g2020 6 48281486 48282669 ECH
Lja4g1533 4 14294638 14295334 Lja6g2020 6 48281486 48282669 PCT