Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2019 ATGGAAGAAGAACAAGAAGGAGTGGTAGACAAGAAAAGGACAAAGAACGAGGTTGTTCTCCGCATTTCGGACACCGAAGATGCAGCTTTGTATGCTCGTAGAGAATCTAGAGGGTCTCCAGTTGCTGAAAGCACTTCTTCTTACTCTCCTCAGCTCAATACCCAGATGGGTACTTCACCAACAAAAGGGTTCAGAGATTCTCAAGTTGAGCTTGAGAATCTCAGAAGCAGGGGTCAAGTTTCCACTGAGTTGGTGACAACCACACGCAGCTTTTTGGGTCGGTCGGAGTTTTCGAAACCAAAGTCCAGAATGGTGGAACCACCATGTCCCAGAGATGTGAGCTTTGTGGAAGAGAAGACTCAGATTATTAAGAGTTCCAATTCATCTGTAAGGAGTTCTCCTAACAAGAAGGTTTCAGGTACTTCTCCAAGGGATGTTGCTGATGGAACTGTTGTCACTCCAAGAACTCCATTGATTGGGACTCCAAGGGAAGAAGAGGAAGATGATGATGAAGAAGTGTACAAGATTGCACATGTTGAAGTGAGTAAGAGAACTGGTAAGAAATGGAAACTTATGGCCTGCACTGAGTTATCTGTTTTTGTTTGCATTCTGGGATTTTTTATTGCAAGCTTGTTGGTCCATAAGTTGCAACATAAGCAAATTTGGGGTTTGGAGCTCTGGAAATTGTGTGTGTTGGCTTTGGTTGTCATCTGTGGTAGACTGGTTACTGAGTGGTTTATGAATGTTCTGGTTTTCTTGATGGAAAGGAACTTCTTGTTTAAGAAGAAAGTTTTGTACTTTGTTTATGGTGTGAAGAAGAGTGTTCAGGCCTTTTTATGGTTAAGTTTGGTTCTTTTGGCATGGGGTCTACTCTTGGAACATGGAGTCAAGAGAACCAGAAAAGTTAAAAGGATTCTTAATTATATTACTAGGGCCCTTGCCTCTGGTCTTATTGGAGCAGCTATATGGTTAGCAAAAACATTTTTGATAAAGCTGTTATCTTCAAAATTCCAATCTACTAGGTTTTTTGACAGGGTACAAGAATCAATCTTTCACCAATACATTCTCAGGACTCTTTCTGGGCCACCTTTGATGGAGATGGCTGAAACAGTAGGCAAGAGTTCAAGTAGTGGCAGACTCAGTTTTAAGACCATGGTTAGAGAGAATAAGAATGAAGGGAAGAAAGAACAAGTCATTGATGTAGATAGGCTCAAGAAAATGAAACAAGAGAAAGTTTCTGCTTGGACCATGAAAGGATTGATTAATGTGATCAGGAGCTCTGGGCTGTCTACCATCTCCTATACACCAGGGAGTGTTGATGAAGATGAGAGTGACCAGATAGATAATGAAATTACAAGTGAGTGGGAAGCGAAGGCTGCTGCTTATCGAATCTTCAAGAATGTAGCCAAGCCAGGAAACAAGTACATTGAGAAGGAAGACCTCTTGCGCTTCATGAAAATTGAAGAAGTGGAAAGTGTTCTTCCCCTATTTGAAGGGGCAGTTGAGACTGGAAGAATTAAGAGGAAGTCTCTAAAGAACTGGCTGGTGAAAGTCTACTTTGAACGCAGATCATTGGTACATTCACTAAATGATACCAATACAGCCGTTGATGACTTGAATAAGCTTGCTTCTGTAGTTGTCCTTGTTGTGATCCTTATTGTGTGGTTACTTCTAATGGGATTCTTAACAACCCAAGTTCTTGTCTTCATTTCCTCCCAGCTTTTACTTGTGGTGTTTATTTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTATGATGTTGGTGATCGCTGTGTCATTGATGGTGTTCAGATGATTGTAGAAGAGATGAACATACTGTCAACAGTCTTTTTGAGATATGACAATGAAAAGATATTTTACCCAAATTCAGTTTTGTCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCGGTCGAATTTGCTGTTGATGTTTCAACTTCAATAGAAAAGATTGGAGCTTTAAAGGCTAAGTTAAAAGCATACTTGGATAGTAAGCCTCAACACTGGCGTCCGAACCACAGTGTAATTGTTAAGGATATTGAGAACGTAAACAAGATGAAAATGGGTCTATATGTTACTCACACCATCAATTTTCAGAATTATGGGGATAAGAACAGCCGAAGATCTGATTTAGTCCTGGAGTTAAAGAAAAGTCTTGAAGATCTCAGTATTAAATATCATCTGCTGCCACAAGAGGTTCATCTCAGTAAAGTAAAATCCGAAGACTCAATGGTGCGAATAGAAAGAGCTTCAAGATGA 2322 0.4014 MEEEQEGVVDKKRTKNEVVLRISDTEDAALYARRESRGSPVAESTSSYSPQLNTQMGTSPTKGFRDSQVELENLRSRGQVSTELVTTTRSFLGRSEFSKPKSRMVEPPCPRDVSFVEEKTQIIKSSNSSVRSSPNKKVSGTSPRDVADGTVVTPRTPLIGTPREEEEDDDEEVYKIAHVEVSKRTGKKWKLMACTELSVFVCILGFFIASLLVHKLQHKQIWGLELWKLCVLALVVICGRLVTEWFMNVLVFLMERNFLFKKKVLYFVYGVKKSVQAFLWLSLVLLAWGLLLEHGVKRTRKVKRILNYITRALASGLIGAAIWLAKTFLIKLLSSKFQSTRFFDRVQESIFHQYILRTLSGPPLMEMAETVGKSSSSGRLSFKTMVRENKNEGKKEQVIDVDRLKKMKQEKVSAWTMKGLINVIRSSGLSTISYTPGSVDEDESDQIDNEITSEWEAKAAAYRIFKNVAKPGNKYIEKEDLLRFMKIEEVESVLPLFEGAVETGRIKRKSLKNWLVKVYFERRSLVHSLNDTNTAVDDLNKLASVVVLVVILIVWLLLMGFLTTQVLVFISSQLLLVVFIFGNTAKTVFEAIIFVFVMHPYDVGDRCVIDGVQMIVEEMNILSTVFLRYDNEKIFYPNSVLSTKPISNFYRSPEMSDSVEFAVDVSTSIEKIGALKAKLKAYLDSKPQHWRPNHSVIVKDIENVNKMKMGLYVTHTINFQNYGDKNSRRSDLVLELKKSLEDLSIKYHLLPQEVHLSKVKSEDSMVRIERASR* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2019 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 11 760 IPR016688 -
Lja6g2019 773 MobiDBLite consensus disorder prediction 124 140 - -
Lja6g2019 773 MobiDBLite consensus disorder prediction 39 64 - -
Lja6g2019 773 Gene3D - 600 649 IPR023408 -
Lja6g2019 773 MobiDBLite consensus disorder prediction 124 165 - -
Lja6g2019 773 PIRSF Memb_At2g17000 1 771 IPR016688 -
Lja6g2019 773 SUPERFAMILY Sm-like ribonucleoproteins 590 649 IPR010920 -
Lja6g2019 773 Pfam Mechanosensitive ion channel 540 744 IPR006685 GO:0016020|GO:0055085
Lja6g2019 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 11 760 - -
Lja6g2019 773 MobiDBLite consensus disorder prediction 31 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2019 Lja-Chr6 48271118 48275152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2019 33 758 Mechanosensitive Ion Channel Family AT5G12080 50.820 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2019 K22048 - gmx:100777332 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2019 6 48271118 48275152 Lja6g2019 6 48271118 48275152 ECH