Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2017 ATGTCGGTGAATCTGACGGCGAACGCGATTCCGACGATTATCGGCGGCGACGTGAACGCGAAGCCGCTAGTCCAGGTTCTCGACGTTGCCTTAGTCTCCGGCGGCAACAACTCTCAGCAGCAGCAGAGGTACCGTGTTGTGCTCTCTGACGCCGTTTCGTCTCACCAAGCCATGCTCGCCGCTCAGCTCAATGACCATGTCCGAAACGGCCGAGTGAAGAAGGGTTCCGTCGTTCAGCTTATCGATTATATATGCTCTACTCTCCAGAATCGCAAGATTATTGTGGTGCTTAACATGGAAACTATAATTCTGGATTGCGAGATCATTGGGAACCCGAAGTCATTTATGAATTCTGATTTACCAATTTTGAGAAATGCTGCGGAGAATTTGCCCAGGAGTAGTGGTAATAATTTGGCTGCTAAGAATGCAAGTCATAATGTGCAGAATTTCAGACCAACGGTTCAACCGGCATACCAACCACCTCCTGTTTACAAAGGTCGTGGTGCGATTGTGAAAAATGAGGCACCGGCACGCGTCATTCCTATTGCTGCTTTAAATCCTTATCAAGGTAGGTGGGCTATCAAGGCAAGGGTAACAGCTAAAGGGGATCTGCGCCGCTATAATAATGCTCGTGGAGATGGGAAAGTCTTCTCGTTTGATCTTCTTGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATTCTGTAGTTGATCGCTTCTATGATTCAATTGAGGCTGGTAAAGTTTACTTGATATCCAGAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTTTGGATTCAAATTCAACTGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCGATAAGTGACATTGAAAATACTGACAGTAACTCCATCCTTGATGTTATCGGGGTAGTGACTTCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAGTTTTGAATCTAAAAGATAGTTCAGGCAGGAGTGTTGAGTTAACACTTTGGGGTGAATTCTGCAATAGGGAAGGACAAAGGCTTCAAGAGATGGTAGATGCTGGGGTTTTCCCCATTTTGGCAGTCAAAGCTGGGAAGGTTAGTGACTTCAGTGGCAAGTCTATTGGTTCTATTTCTACTACACAGCTTTTCATTAATCCAGATTTCCCTGAGGCTCATAGCTTAAGAGATTGGTTTGATCAAGTTGGAAAAGATTCTGCTTCTTTATCAATTTCTAAGGACTTCATTCCTGGAGGACCAAAGAATGAGATACGCAAAACTGTGTCTCAGATCAAAGATGAAGGTCTGGGACGGTCAGACAAGCCAGACTGGATAACAGTCAGGGCGACCATATCATTCATGAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAGTAAGAAAGTAACTAGGTCAGGGAACATGAGTTGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGACTACCGGTACCTTCTCCAAGCTCAAATCCTGGATCACACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGGGGTGCTCCGCAAAGGAGTTGTACTTCTTGAAAAATGAAGAGCAGGATGACGACAGGTTTGGAGAAATAATCAAGAGTAAACTCTTCAACCATTTTGTATTCAAGCTGAAAATAAAAGAGGAATTATATGGTGACGAACAGAAGGTGAAGATTACAGTGGTCAAGGCAGATCAGGTGAATTATTCTTCAGAGAGTAGATACATGCTTGATTTGATTTCCAAATTTTGTAGGCAGTGA 1878 0.4372 MSVNLTANAIPTIIGGDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLAAQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNPKSFMNSDLPILRNAAENLPRSSGNNLAAKNASHNVQNFRPTVQPAYQPPPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDIENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFPEAHSLRDWFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIKEELYGDEQKVKITVVKADQVNYSSESRYMLDLISKFCRQ* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2017 625 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lja6g2017 625 Pfam Replication factor-A C terminal domain 464 614 IPR013955 -
Lja6g2017 625 Gene3D - 178 288 IPR012340 -
Lja6g2017 625 SUPERFAMILY Nucleic acid-binding proteins 445 622 IPR012340 -
Lja6g2017 625 Gene3D - 3 116 IPR012340 -
Lja6g2017 625 Pfam Replication protein A OB domain 302 406 IPR031657 -
Lja6g2017 625 CDD RPA1_DBD_A 181 284 - -
Lja6g2017 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
Lja6g2017 625 CDD RPA1_DBD_C 448 621 IPR013955 -
Lja6g2017 625 PANTHER REPLICATION FACTOR A 1, RFA1 2 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja6g2017 625 SUPERFAMILY Nucleic acid-binding proteins 179 291 IPR012340 -
Lja6g2017 625 CDD RPA1N 9 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lja6g2017 625 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 619 - -
Lja6g2017 625 CDD RPA1_DBD_B 313 420 - -
Lja6g2017 625 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 621 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja6g2017 625 Pfam OB-fold nucleic acid binding domain 193 275 IPR004365 GO:0003676
Lja6g2017 625 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Lja6g2017 625 Gene3D - 291 429 IPR012340 -
Lja6g2017 625 Gene3D - 435 623 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2017 Lja-Chr6 48266213 48269920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2017 26 621 Core DNA Replication Machinery Family AT2G06510 68.831 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2017 K07466 - gmx:100792409 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2017 6 48266213 48269920 Lja6g2017 6 48266213 48269920 ECH