Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2015 ATGGGAAGAAGCCCTTGTTGTTCAAAGAAGGGTTTGAATCGAGGTGCCTGGACATCACAGGAAGATAAAATACTCCGAGATTATGTTCATCTCCATGGCCAAGGAAAATGGAGAAATCTTCCTCAAAGTGCAGGTTTGAAGCGTTGTGGGAAAAGCTGTAGACTTAGATGGTTGAATTATCTGAAACCAGGTATCAAGAGAGGCAATATATCAACAGATGAAGAAGAGCTTATTATTAGACTTCACAAACTCCTAGGAAACAGATGGTCTCTCATAGCTGGAAGACTTCCAGGACGAACAGACAACGAGATAAAGAACTACTGGAACACCTATTTATGTAAAAAAGTTCAAGATGGTGTTGGTGGTGACTCCAAAACCAAAGCCCCATCTTCACAAGAAAAGAGTCATCAGCCAAAGCCTCAATCAATACTTGAAAATAATAATGTGATTCGTACAAAGGCATCCAAGTGTTCCAAATTGTTGCTCATAGATCCTCCTTTCCCTTGCGCATCATCAATGCAAAAGCAGAGCGATTTCATGGTAGAATTAATAAAACCAGAAGCAGAGCCCTTGCTTGTGGTTGATATTGCTGCAGCCAATGATGATGATGAGAAGGAACTCTCCACAGATTTGCTCTTGGACTTTGATATTGGCGAAATTTGCTTATCAGATTTTTTCAACTCCGATTTTTGGGAGGTGCCTGACTTCAATCACAACATTAACCATGATGATCAAATAATCTAA 744 0.4005 MGRSPCCSKKGLNRGAWTSQEDKILRDYVHLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYLKPGIKRGNISTDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLCKKVQDGVGGDSKTKAPSSQEKSHQPKPQSILENNNVIRTKASKCSKLLLIDPPFPCASSMQKQSDFMVELIKPEAEPLLVVDIAAANDDDEKELSTDLLLDFDIGEICLSDFFNSDFWEVPDFNHNINHDDQII* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2015 247 Gene3D - 71 145 - -
Lja6g2015 247 CDD SANT 16 61 IPR001005 -
Lja6g2015 247 Gene3D - 14 66 - -
Lja6g2015 247 MobiDBLite consensus disorder prediction 124 143 - -
Lja6g2015 247 SMART sant 13 63 IPR001005 -
Lja6g2015 247 SMART sant 66 114 IPR001005 -
Lja6g2015 247 PANTHER MYB TRANSCRIPTION FACTOR 1 234 - -
Lja6g2015 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja6g2015 247 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g2015 247 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja6g2015 247 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g2015 247 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g2015 247 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja6g2015 247 CDD SANT 71 112 IPR001005 -
Lja6g2015 247 MobiDBLite consensus disorder prediction 122 143 - -
Lja6g2015 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja6g2015 247 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2015 Lja-Chr6 48248525 48249780 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2015 1 215 MYB Transcription Factor Family AT1G35515 45.116 6.50e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g2015 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2015 K09422 - gmx:100802704 295.434