Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2013 ATGGGAAGAAGCCCTTGTTGTTCAAAGCAGGGTTTGAACCGAGGTGCCTGGACAGCACAGGAAGACCAAATCCTCCGAGACTATGTTCATCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGTGCAGGTTTGAAACGTTGTGGCAAAAGCTGTAGACTTAGATGGTTGAATTATCTAAGACCAGATATCAAAAGAGGCAATATATCCAGAGATGAAGAAGAGCTTATCATCCGACTTCACAAGCTCCTAGGAAACAGATGGTCTCTAATAGCTGGAAGGCTTCCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCAATCTATGTAAAAGAGTTCAAGATGGTGTTGATGTTGGTGACTCCAAAACCCCATCTTCACAAGAAAAGAACAATCACCATGATCAGAAAGCAAAGCCTCAATCTGTTACTCCCTCAGTATTCTCCTCATCACAGCCTAAAAACAATAATGTGATTCGTACAAAGGCATCGAAGTGCTCCAAGGTGCTGCTCCGGGATCCTCTTCTCCCTTGCCCGCCAATGCAAACGCAGAGCGACGATTTCATCGCAAAATTATTAGAAGAAGCAGAAGGAGAGCCATTGCTTTCTGCTGTGGCCAATGATTTTACTAGTGGCGACGAAGACGGGGTTCTTTCATTTGATCCTTGTGGAAATGAGAAGGAACTCTCCACGGATTTGCTCTTGGATTTGGACATTGGTGAAATTTGCTTGCCTGAATTTATCAACTCAGATTTTTCATATGTGTGTGACTTCAGCTACAACACTCATGAGGATCTAATGCTTTTTTCCGAGAACACACTTGTCCAGGCACAGAAGTACCTCGGTGATGAAACAAATTTGGTAAATAATTGTTTTAATGAGGAGAAGGATAATGGTTGCTAA 912 0.4287 MGRSPCCSKQGLNRGAWTAQEDQILRDYVHLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYLRPDIKRGNISRDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLCKRVQDGVDVGDSKTPSSQEKNNHHDQKAKPQSVTPSVFSSSQPKNNNVIRTKASKCSKVLLRDPLLPCPPMQTQSDDFIAKLLEEAEGEPLLSAVANDFTSGDEDGVLSFDPCGNEKELSTDLLLDLDIGEICLPEFINSDFSYVCDFSYNTHEDLMLFSENTLVQAQKYLGDETNLVNNCFNEEKDNGC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2013 303 Gene3D - 14 66 - -
Lja6g2013 303 CDD SANT 16 61 IPR001005 -
Lja6g2013 303 MobiDBLite consensus disorder prediction 119 157 - -
Lja6g2013 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g2013 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja6g2013 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lja6g2013 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g2013 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja6g2013 303 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 268 - -
Lja6g2013 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g2013 303 PANTHER TRANSCRIPTION FACTOR TT2 1 268 - -
Lja6g2013 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja6g2013 303 CDD SANT 71 112 IPR001005 -
Lja6g2013 303 Gene3D - 70 146 - -
Lja6g2013 303 SMART sant 13 63 IPR001005 -
Lja6g2013 303 SMART sant 66 114 IPR001005 -
Lja6g2013 303 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2013 Lja-Chr6 48225428 48227164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2013 1 131 MYB Transcription Factor Family AT4G09460 65.217 3.83e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g2013 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2013 K09422 - gmx:100781908 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2013 6 48225428 48227164 Lja6g2013 6 48225428 48227164 ECH
Lja6g2013 6 48225428 48227164 Lja4g1527 4 14242180 14243690 PCT