Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2012 ATGGGAAGAAGCCCTTGTTGTTCAAAGAAGGGTTTGAATCGAGGTGTCTGGACAGCACAGGAAGACCAAATCCTCCGAGATTATGTTAATCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGTGCAGGTTTGAAGCGTTGTGGCAAAAGCTGCAGACTTCGATGGCTGAATTATCTAAGACCAGGTATCAAGAGAGGCAATATATCAACAGATGAAGAAGAACTTATCATTCGACTTCATAAACTATTAGGAAACAGATGGTCTCTCATAGCTGGAAGGCTTCCAGGCCGAACAGACAATGAGATAAAGAATTACTGGAACACCAATTTATGTAAAAAAGTTCAAGATGGTGTTATGGCTGGTGAGTCTAAAACCAAAACCCCATCTACACAGGAGAAAAACCTGCATCATGATCATCAGAAAGCAAAGGCTCAATCAATTACTCCTTCACCCCCTAAAAACAATATGATATATACAAAGGCATCCAAGTGCTCCAAGGTGCTTCTCCTGGATCCTGTTCTCCCTTGTCCGTCAATGCAAATGCAGAGCGACAATTTCATCACAGAATTATTAGAAGAAGCAGGAGCAGAGTCATTGCTTGTGGATCATGATAGTGCTGCCACCAAAGAAGATGGAATTCTGGCATTTCTCTTTGATGATGATGAGAAGGAACTCTCCACTGATATTTCGCTCTTGGATTTTGACATTGGCGAAATTCACTTGCCTGATTTGCTCAACTCCAATCTCTGGGATGGGTGTGAACTGAATTGA 777 0.4221 MGRSPCCSKKGLNRGVWTAQEDQILRDYVNLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYLRPGIKRGNISTDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLCKKVQDGVMAGESKTKTPSTQEKNLHHDHQKAKAQSITPSPPKNNMIYTKASKCSKVLLLDPVLPCPSMQMQSDNFITELLEEAGAESLLVDHDSAATKEDGILAFLFDDDEKELSTDISLLDFDIGEIHLPDLLNSNLWDGCELN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2012 258 Gene3D - 69 149 - -
Lja6g2012 258 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja6g2012 258 SMART sant 13 63 IPR001005 -
Lja6g2012 258 SMART sant 66 114 IPR001005 -
Lja6g2012 258 CDD SANT 17 61 IPR001005 -
Lja6g2012 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g2012 258 PANTHER TRANSCRIPTION FACTOR TT2 1 240 - -
Lja6g2012 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g2012 258 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja6g2012 258 MobiDBLite consensus disorder prediction 131 145 - -
Lja6g2012 258 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 240 - -
Lja6g2012 258 CDD SANT 71 112 IPR001005 -
Lja6g2012 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g2012 258 Gene3D - 14 66 - -
Lja6g2012 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja6g2012 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja6g2012 258 MobiDBLite consensus disorder prediction 122 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2012 Lja-Chr6 48205400 48206838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2012 1 116 MYB Transcription Factor Family AT4G09460 69.828 1.63e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g2012 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2012 K09422 - gmx:100781908 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2012 6 48205400 48206838 Lja3g1579 3 17327756 17328926 ECH
Lja6g2012 6 48205400 48206838 Lja6g2012 6 48205400 48206838 ECH