Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2010 ATGAATGGAAGGAACAGGTTCCCTTTTACTCCGTCACAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTAACTCCATCCCACCTGATCTTCTCTTCACTATTAGAAGAAGCTACTTGGATTCTCCTTTGCCTTCAAGGCTTATGCCTAACCAATCACAACACTTTGGATGGAACTACCTGCAAATGGGGTTAGGAAGAAAAATAGACCCAGAGCCAGGTAGGTGCAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGATGCATACCCAGATTCCAAGTACTGTGAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCAACAACAACAAATGCAACACCAGTAGCATTCTCATCAATCACAAGAAATAGCCCAGCACTAACCCCAACTAATAATTCTCTTTCACCACTTTCATCTTCTTGTGTGTCCTCTGAGACAAACCATCACCAATCTCAACATTCTGGCTTCTATGGTTCTCATCTTCAGCACTCGTTTCTCTATGATCACCCTTCATCAAGGCCTTCTGGTATTGGTTTCTCATTTGAAGACAACAATAGCAGTGCTTCTTTGTTTCAGGACACTGGCTCTTATTCTCAGACTAATGACAACTGCAGGTATGTTTATGGACAGAAAGAGGAGGTGGATGAACATGCTTTCTTCACTGAGCCTTCTGGTGTTATGAAAAGCTTCTCTGCTTCCTCTATGGATGATCCTTGGCAACTCACACCACTTACTATGAGCTCCTCATCATCTTCTTCAACATCAAAACAGAGGAGTTGCTCTGGTTTGTCTAGTGATTACTCTTACTTGCAACTTCAGAGCCTCAGTGAGCACTCAAAACAGCAACAGCAAGATCAGGGTTGCTACCTGTTAGGAGGTGAAATCATGAAAATGGGAAAAGAAGAGCCTCAGAGAACAGTTCACCGCTTCTTTGATGAGTTGCCCCACAAAAGCAGAGAAGGGTCATGGCTTGATTTGGATGATAAATCTTCCACTACCCAGCTATCAATTTCCATTCCAACCTTCAACTCCAGAACTCACCATGATGGGACTTGA 1107 0.4309 MNGRNRFPFTPSQWQELEHQALIYKYMASGNSIPPDLLFTIRRSYLDSPLPSRLMPNQSQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGKNRSRKPVEVLKTSTTTNATPVAFSSITRNSPALTPTNNSLSPLSSSCVSSETNHHQSQHSGFYGSHLQHSFLYDHPSSRPSGIGFSFEDNNSSASLFQDTGSYSQTNDNCRYVYGQKEEVDEHAFFTEPSGVMKSFSASSMDDPWQLTPLTMSSSSSSSTSKQRSCSGLSSDYSYLQLQSLSEHSKQQQQDQGCYLLGGEIMKMGKEEPQRTVHRFFDELPHKSREGSWLDLDDKSSTTQLSISIPTFNSRTHHDGT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2010 368 MobiDBLite consensus disorder prediction 131 172 - -
Lja6g2010 368 Pfam QLQ 8 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja6g2010 368 Pfam WRC 77 119 IPR014977 -
Lja6g2010 368 PANTHER - 3 350 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lja6g2010 368 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja6g2010 368 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja6g2010 368 PANTHER GROWTH-REGULATING FACTOR 5 3 350 - -
Lja6g2010 368 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2010 Lja-Chr6 48165560 48168092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2010 6 119 GRF Transcription Factor Family AT3G13960 71.930 1.10e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lja6g2010 WRC 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2010 - - lja:Lj6g3v1201190.1 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2010 6 48165560 48168092 Lja6g2010 6 48165560 48168092 ECH
Lja4g1524 4 14215180 14217589 Lja6g2010 6 48165560 48168092 PCT