Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1999 ATGGCAATCATGAAAGTTATATGGAAAGCGATCTTCCCAGGTTGTTACAAGGGTGGTTATCCCTCAACCAAGCCCAAGAAAGTGGTGGCCACAAAGCCACCAAGTTCATCTCACAGCAGGATTTCTGTAACTGATTTGAGCAACCCTGGAAGCACCACTTTTACAGAGGATCTCTCAATTTCTCTAGCAGGAACTAACATTCATGCTTTCACTGTGGCTGAGCTCAAAGTTATCACACAGCACTTTTCTTCTAGCAATTTCCTAGGAGAAGGTGGATTTGGACCAGTGCATAAGGGTTTCATTGATGACAAGCTTAGGCCTGGTCTCATCAAGGCTCAACCAGTTGCTGTAAAGCTCTTGGACTTGGATGGCAAACAAGGCCATAAAGAGTGGCTGGCTGAAGTTGTTTTTCTGGGGCAATTCAGGCATCCACACCTTGTGAAGCTAATTGGATACTGCATTGAAGATGAACACAGGCTTCTAGTGTATGAGTATTTGCCAAGAGGGAGCTTAGAGAATCAATTATTTAGAAGATACTCAGCATCTCTGCCTTGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAGGGTCTAGCTTTTCTTCATGATGCAGAGAAACCAGTCATCTACAGAGATTTCAAAGCTTCCAACATCTTGTTAGACTCTGATTTCAATGCAAAACTATCAGATTTTGGGTTGGCAAAAGATGGTCCAGAAGGAGATGACACCCACGTTTCAACCAGGGTCATGGGCACCCAAGGCTATTGTGCCCCAGAATATGTCATGACAGGTCATTTGACAGCAATGAGTGACGTGTATAGCTTCGGAGTAGTGCTGTTGGAGCTGTTAACAGGAAGAAGGTCAGTGGACAAGAACCGTCCTGCAAGGGAGCAGAACCTTGTGGATTGGGCAAGGCCCATGTTGCATGATTCAAGGAAGCTTAGCAGGATCATGGACCCTAGGCTTGAAGGGCAATACTCTGAGATGGGAGCTAAAAAAGCAGCAGCACTGGCTTATGACTGCCTCAGCCATAGGCCCAAGAGTAGGCCCACAATGAGCACAGTGGTTAAGGCTCTTGAACCCCTTCAGGATTTTGATGACATTCCAATGGGACCCTTTGTGTACACAGTTCCAGCTGATAAAAGTGAAGTGCTTAAAGAAGGGAAGGATTTTGAATCACCTAGGGACAGGAAGAGGAGTCCCCATCCAAACAGAGGACATAGGCCTCATCCACTTAAATCCCCAAAGTCATCACCAAAGCCATCACCAAGGCCATCACCAAGGCCACAGTCACAAACTGATAGACATAGAAATGGGAGAGGAAGTGGATCAAATTCTCCTCCTGATCATCAGAAAGGCAAGGAAAGGTAG 1374 0.4578 MAIMKVIWKAIFPGCYKGGYPSTKPKKVVATKPPSSSHSRISVTDLSNPGSTTFTEDLSISLAGTNIHAFTVAELKVITQHFSSSNFLGEGGFGPVHKGFIDDKLRPGLIKAQPVAVKLLDLDGKQGHKEWLAEVVFLGQFRHPHLVKLIGYCIEDEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAEKPVIYRDFKASNILLDSDFNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYCAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPAREQNLVDWARPMLHDSRKLSRIMDPRLEGQYSEMGAKKAAALAYDCLSHRPKSRPTMSTVVKALEPLQDFDDIPMGPFVYTVPADKSEVLKEGKDFESPRDRKRSPHPNRGHRPHPLKSPKSSPKPSPRPSPRPQSQTDRHRNGRGSGSNSPPDHQKGKER* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1999 457 CDD STKc_IRAK 88 363 - -
Lja6g1999 457 Gene3D Phosphorylase Kinase; domain 1 46 165 - -
Lja6g1999 457 MobiDBLite consensus disorder prediction 386 457 - -
Lja6g1999 457 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 27 411 - -
Lja6g1999 457 MobiDBLite consensus disorder prediction 401 415 - -
Lja6g1999 457 PANTHER OS01G0588500 PROTEIN-RELATED 27 411 - -
Lja6g1999 457 MobiDBLite consensus disorder prediction 386 400 - -
Lja6g1999 457 Pfam Protein tyrosine and serine/threonine kinase 86 360 IPR001245 GO:0004672|GO:0006468
Lja6g1999 457 SUPERFAMILY Protein kinase-like (PK-like) 57 361 IPR011009 -
Lja6g1999 457 Gene3D Transferase(Phosphotransferase) domain 1 166 369 - -
Lja6g1999 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lja6g1999 457 ProSiteProfiles Protein kinase domain profile. 82 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1999 Lja-Chr6 47978973 47981651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1999 65 360 Glycoside Hydrolase AT3G07070 54.817 9.21e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja6g1999 PK_Tyr_Ser-Thr 7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1999 - - gmx:100783759 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1999 6 47978973 47981651 Lja6g1999 6 47978973 47981651 ECH
Lja4g1508 4 13937584 13941024 Lja6g1999 6 47978973 47981651 PCT