Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1993 ATGCAGAAGAAGACACTGTTATCCTTCAACAATGGCGATCCAACCAAGAAGAAGGTGTCATTGTGCGGCAAGGAAGCGTTGGTGAAGCTCCTAAGATGGCATTTCGGGTACCCTGATTTTAGGGGTCAGCAATTGGAAGCTATTCAAGCTGTGCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCAATGTGTTATCAGATTCCTGCATTGGCAAAAGCGGGAATCGTACTGGTTGTTTGTCCCTTAATTGCCTTAATGGAAAATCAAGTGATGGCGCTAAAGGAGAAGGGAATTGCTGCAGAGTTTCTCTCCTCAACAAAAACGGCAGGTGCAAGGGATAAGATTCATGAGGACCTTAATTCTGGAAAACCTTCTACAAGGCTACTATATGTAACTCCAGAGTTGATAGCAACACCAGGGTTTATGTCAAAGCTGAAAAAGATTTATGCTAGGGGGTTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGTCACGATTTCAGGCCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTCTGACAGCAACTGCTGTTCCTAAGGTTCAGAAAGATGTAGTAGAATCCTTGCAGATGCAAAATCCGTTACTACTGAAGTCTTCATTTAATCGTCCTAACATATATTATGAAGTTAGATACAAAGATCTACTGGATGATGCTTATGCTGATTTATCTAATACACTCAAATCCAAGGGAGATGTTTGTGGAATAGTTTACTGCCTTGAACGTTCAATGTGTGATGACTTATCAGCTCATCTGTCCCAAAGTGGCATTTCTTGTGCTGCTTATCATGCAGGATTGAATAATACAAAGCGAACTTCTGTGTTAGATGATTGGATTTCTTCAAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCAAAGTCAATGGAAGGATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTGCCCTCTACAAGCCTGTTGTACTATGGGGTAGATGATCGCAAAAGAATGGAATTTATCTTATCCAACTCAGGGAGTAAGAAGGCACAATCATCAAGTTCACAAGAAGAATCATCCAGAATGTCCCTGACTGCTTTCAATCAGATGGTTGAATATTGTGAGGGATCTGGATGTCGTAGGAAAAGGATTCTCGAGAGTTTTGGGGAGCAGGTAACTGCATCACTCTGTGGCAAAACATGTGATGCCTGTAGACATCCAAACTTAGTTTCTAGATACTTGGAGAATCTCGCTGCTACCTGTGCTCTACGGCAGAAAAATGGTTCTTCTAGAGTTTTTATCACCAGTTCCACTGGTGCAACTGATGGAGAGCAGTTATCTGAATTCTGGAATCGCAATGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGATGATGGCAATGAGGTTGTTAACAACCTGGCCCATTCAAAGCTTCAATCCAGATTGGGATTGAATGAAAAGCTTGCTTTGTTACAAAAGGCAGAAGAAAACTTCTATCGAAATGACAACACTGATAAACAGAGGAAAAATGTTGACAAGAATGCTATTTCTGATACAATGCGAGGAACGAGCAGGGAAAGATTACAAAATGCTCTTAAACAGGCTCAGCAACGGCTTGACAACTTCAGGATTGAAATAGAAACCTCAGCATCATTTCTTGAGGATGAATGCTACAAGAAATATGGCAAGGCTGGCAAATCATTCTATTATTCACAAGTGGCAAGTACTGTGAGGTGGCTGACAACTACAAGTCCTACCAATCTGATGGATCGACTTTGTGCGATTAGTTCTTCCACATCAGCGCTTAGTTCTTCCACATCAACGACAGAAGCTGAACACCCCCTCACACCCCTTGCTTTAGATCCTTGTACAAAAGAAGATATTGGCAGTGAACCCTCAGGCAATGCTGGATCAGAAACTTTCCAATGTGTGCCAATGGAAAGTTCTGTGAATGCAAAGTTGCCACAAATACCATCCTTCTCTGAGTTCGTAAATAGTAGGAAAACAAAAGGGGACCAAGTAAAGGACACACAAAAGCCTTCACCAAGAGTAGAAAAGAAGATGAGGATAGAGTAG 2184 0.418 MQKKTLLSFNNGDPTKKKVSLCGKEALVKLLRWHFGYPDFRGQQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKAGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTAGARDKIHEDLNSGKPSTRLLYVTPELIATPGFMSKLKKIYARGLLSLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLQMQNPLLLKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSKGDVCGIVYCLERSMCDDLSAHLSQSGISCAAYHAGLNNTKRTSVLDDWISSKIKVVVATVAFGMGIDRKDVRIVCHFNIPKSMEGFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSNSGSKKAQSSSSQEESSRMSLTAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDACRHPNLVSRYLENLAATCALRQKNGSSRVFITSSTGATDGEQLSEFWNRNEEASGSEEDISDSDDGNEVVNNLAHSKLQSRLGLNEKLALLQKAEENFYRNDNTDKQRKNVDKNAISDTMRGTSRERLQNALKQAQQRLDNFRIEIETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTTSPTNLMDRLCAISSSTSALSSSTSTTEAEHPLTPLALDPCTKEDIGSEPSGNAGSETFQCVPMESSVNAKLPQIPSFSEFVNSRKTKGDQVKDTQKPSPRVEKKMRIE* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1993 727 Pfam Helicase conserved C-terminal domain 251 352 IPR001650 -
Lja6g1993 727 MobiDBLite consensus disorder prediction 639 677 - -
Lja6g1993 727 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 711 - -
Lja6g1993 727 Coils Coil 561 581 - -
Lja6g1993 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Lja6g1993 727 Pfam DEAD/DEAH box helicase 44 209 IPR011545 GO:0003676|GO:0005524
Lja6g1993 727 CDD SF2_C_RecQ 230 363 - -
Lja6g1993 727 Pfam RecQ zinc-binding 367 438 IPR032284 -
Lja6g1993 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 374 IPR027417 -
Lja6g1993 727 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 30 440 IPR004589 GO:0004386|GO:0006310
Lja6g1993 727 MobiDBLite consensus disorder prediction 704 727 - -
Lja6g1993 727 Gene3D - 230 456 IPR027417 -
Lja6g1993 727 MobiDBLite consensus disorder prediction 697 727 - -
Lja6g1993 727 CDD DEXHc_RecQ 29 229 - -
Lja6g1993 727 Gene3D - 5 229 IPR027417 -
Lja6g1993 727 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 7 711 - -
Lja6g1993 727 SMART helicmild6 273 354 IPR001650 -
Lja6g1993 727 SMART ultradead3 36 238 IPR014001 -
Lja6g1993 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 394 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1993 Lja-Chr6 47902778 47910788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1993 33 369 Eukaryotic Initiation Factors Gene Family AT3G19760 20.170 1.81e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1993 6 47902778 47910788 Lja6g1993 6 47902778 47910788 ECH