Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1992 ATGGCATCATCGGGTTCGAACGAACTCACCGGCACCAACACGCTTCAGTCCATTCGCTACAATCGCGGTTCCCTTCAGCTTCTTGATCAGAGAAAACTCCCTCTAGAAACAATTTACTTGGAGATTCGCGATTCAACCGATGGCTGGAATGCCATTCGGGATATGGTGGTCCGAGGAGCACCTGCTATTGCCATTGCAGCCGCACTCGCCCTGGCTGTGGAGGTATCTAATCTAGGTGATTTTAGTGGGTCGCCCAGTGATGCGGCTTCCTTCCTGCAGAACAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCAACAAAACTCAAAGAAGTCATATCTGGAGCTGCTGCTACCGCTTCAGAGGCCAAAAGTGTTTTTCAGGATTATATAGAGGCTGCTGAAATTATGCTCGTCGATGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAGCTACTTTTATTCAACACCAAGTTGAGAAGCCTAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCTACTGCTGGATATGGTACTGCTCTGGGTGTAATCCGTGCACTTCATAGTGGAGGAGCTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGGATCTAGACTGACTGCCTTTGAGTTGGTACATGATAAAATACCAGCAGCTCTTATAGCGGATTCTGCTGCAGCTGCACTAATGAAGTCGGGACGCGTGGATGCTGTTGTTGTGGGGGCGGATCGTGTTGCATCAAACGGAGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTTTATGTGGCTGCACCATTGACTTCAATTGATCTCTCACTTTCTTCTGGAGAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAGTTGTTGAACTCACGTGGAGGACTTGGAGAGCAGGTTGCTGCATCAGGAATTTCTGTATGGAACCCTGCTTTTGATGTCACACCTGCTAACATAATATCTGGGATTATTACTGAGAAGGGTGTCATTACAAAGTCATCTGCTGCTGATGCTTTTGACATAAAAGCTTTCATACAAAAAACACTTTAA 1128 0.4557 MASSGSNELTGTNTLQSIRYNRGSLQLLDQRKLPLETIYLEIRDSTDGWNAIRDMVVRGAPAIAIAAALALAVEVSNLGDFSGSPSDAASFLQNKLEYLVSSRPTAVNLSDAATKLKEVISGAAATASEAKSVFQDYIEAAEIMLVDDVASNRAIGSYGATFIQHQVEKPKLSVLTHCNTGSLATAGYGTALGVIRALHSGGALERAYCTETRPFNQGSRLTAFELVHDKIPAALIADSAAAALMKSGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQKTL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1992 375 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 43 358 IPR011559 GO:0044249
Lja6g1992 375 Gene3D - 13 169 IPR027363 -
Lja6g1992 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Lja6g1992 375 SUPERFAMILY NagB/RpiA/CoA transferase-like 12 362 IPR037171 -
Lja6g1992 375 Pfam Initiation factor 2 subunit family 57 357 IPR000649 GO:0044237
Lja6g1992 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Lja6g1992 375 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 15 367 IPR005251 -
Lja6g1992 375 Gene3D - 170 369 IPR042529 -
Lja6g1992 375 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 16 358 IPR005251 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1992 54 373 Eukaryotic Initiation Factors Gene Family AT2G05830 77.259 5.51e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1992 K08963 - gmx:100799311 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1992 6 47897962 47901457 Lja6g1992 6 47897962 47901457 ECH