Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1985 ATGGCCGCTGTTCGCACCTTCCACCACCACAACAACCACCACACCCACCACCTCCTCCTCTGTCTCTTCCTCTTCCTCTTCATCTCCCTCTCCCTCTCCTCAGCCTCAGAGACTCAATCCCTCCTCAAGCTCAAACAATCCTTCACCAACGCCGACAAGTCCTTAGCCTCATGGATCCCCAACGTGTCCCCATGCTCCGGCACCTGGACCGGCGTAATCTGCTTCAACAACATCGTCACCGGCCTCCACCTCTCCGACCTCAACCTCTCCGGCACAATCGACGTCGAAGCTCTCGCCGAGATTCACGGCCTCCGAACTCTCAGCTTCGTCAACAACTCCTTCTCCGGCACAATCCCAAGCTTCAACAAGCTCGGACCCATCAAATCCCTCCTCCTCACCCAGAACCACTTCTCCGGCCCCATCCCACAAAACTTCTTCTCCACGTTATCCTCCCTCAAGAAACTCTGGCTCTCCGGCAACAAATTCTCCGGCGAAATCCCCGTCTCCTTAACCGAACCCGACCTCCTCAAAGAGCTTCACCTCGAAGGAAACCAGTTCACCGGCCGACTCCCTAACCTGAAACAAGACTTCCGATCATTCGACGTGTCGCACAACCAGCTCGAAGGTCCCATCCCGGAAAGCTTGTCGAAATACGGCGTGGTGTCGTTCTCCGGCAACGAAGGTCTCTGTGGGAAGCCGTTGGATAAGCCATGTTCCGGCGGCGGTGACGATTCGTCTTCTTATTACTCCATTCCGACAGGCTCTGGAGTCGGAGGCGGCGACGGCGGTTACGGGTCAAGCTGGGCGGCGAAGGTGATTGTGATCCTCCTTCTGGCGGTTATCGCGGCGGTGATATTCCTGTTCGTGAAGTCCAGACGGCGGCACGATGATGATTTCAGCGTGGTGAGCAGGAACAGTAGTAGCAGCATGGACGAGCTGGTGCAAGTGCATGTACCCAGCTTCAAGAGCAGTAGCAGCTTCAGGGGCGGTAGCAGCAGCGGCGGTGTTGTTAATAGAAGCTTATCCGCCTCTCGGTCCATGTCGTCGACGTCGGGGCCGGCGGGGAGGAAGGAGTCGTCATCTTCTTCGCATGGTAAGAAGGGAGGAGGAGGGACGAAAGGGGGAGCTGTGGGGGATCTTGTGATGGTGAATGAGGGACAAGGGGTGGCGTTTGGAATGCAGGATTTGATGAAGGCGGCGGCGGAGGTTCTGGGGAACGGTGGTTTGGGGTCGGCGTATAAGGCCGCCATGGCGAATGGGTTGAGTGTGGTTGTGAAGAGGATGAGGGACATGAATAAGATTGGTAGAGATGTGTTTGATGCTGAGATGAGACAGTTTGGGAGGATCAAACATCCTAACATCTTGACTCCATTGGCTTACCATTATAGGAAAGAGGAGAAGCTCTTTGTCACTGAGTACATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGATAGAGGAATAATCCATGCTGGTCTGAATTGGCCTACCCGTTTGAAGATTGTTAAGGGGATAGCAAGGGGATTGGGCTTCCTTTACACTGAGTATTCTACCTACGACCTTCCCCATGGGAACCTTAAATCTAACAATGTTCTGCTAACTGATGATTACGAGCCTCTCTTGAGTGACTATGCTTTTCAACCACTAATCAACCCCAACATTGCAGTGCAGTCAATGTTTGCCTACAAGACCCCAGATTACGTGCACGGCCAGAAAGTTTCACAGAAGACTGATGTTTACTGCTTCGGAATCATCATTCTTGAAGTCGTTACCGGAAAATTCCCTTGTCAATATCACAGCAATGGCATGGGTGGGACTGATGTTGTGCAGTGGGTTTTCACTGCGATCTCTGAGAGAAGAGAAGGAGAATTGATTGATCCTGAGCTACAAAGTGAAACAAAATCGCTCAACCAGATGCTGCAGCTTCTCCAAATTGGGGCTGCTTGCACGGAAGGCAACCCTGACCGAAGACTGCACATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACAGGTTTGA 2022 0.5262 MAAVRTFHHHNNHHTHHLLLCLFLFLFISLSLSSASETQSLLKLKQSFTNADKSLASWIPNVSPCSGTWTGVICFNNIVTGLHLSDLNLSGTIDVEALAEIHGLRTLSFVNNSFSGTIPSFNKLGPIKSLLLTQNHFSGPIPQNFFSTLSSLKKLWLSGNKFSGEIPVSLTEPDLLKELHLEGNQFTGRLPNLKQDFRSFDVSHNQLEGPIPESLSKYGVVSFSGNEGLCGKPLDKPCSGGGDDSSSYYSIPTGSGVGGGDGGYGSSWAAKVIVILLLAVIAAVIFLFVKSRRRHDDDFSVVSRNSSSSMDELVQVHVPSFKSSSSFRGGSSSGGVVNRSLSASRSMSSTSGPAGRKESSSSSHGKKGGGGTKGGAVGDLVMVNEGQGVAFGMQDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMRDMNKIGRDVFDAEMRQFGRIKHPNILTPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGIIHAGLNWPTRLKIVKGIARGLGFLYTEYSTYDLPHGNLKSNNVLLTDDYEPLLSDYAFQPLINPNIAVQSMFAYKTPDYVHGQKVSQKTDVYCFGIIILEVVTGKFPCQYHSNGMGGTDVVQWVFTAISERREGELIDPELQSETKSLNQMLQLLQIGAACTEGNPDRRLHMKEAIRRIEEVQV* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1985 673 PANTHER LRR RECEPTOR-LIKE KINASE 15 673 - -
Lja6g1985 673 ProSiteProfiles Protein kinase domain profile. 398 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1985 673 SUPERFAMILY Protein kinase-like (PK-like) 402 668 IPR011009 -
Lja6g1985 673 Gene3D Transferase(Phosphotransferase) domain 1 475 673 - -
Lja6g1985 673 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 673 - -
Lja6g1985 673 Gene3D Ribonuclease Inhibitor 197 241 IPR032675 -
Lja6g1985 673 Pfam Protein kinase domain 402 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1985 673 SUPERFAMILY L domain-like 36 224 - -
Lja6g1985 673 MobiDBLite consensus disorder prediction 322 367 - -
Lja6g1985 673 MobiDBLite consensus disorder prediction 322 376 - -
Lja6g1985 673 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Lja6g1985 673 Gene3D Ribonuclease Inhibitor 34 196 IPR032675 -
Lja6g1985 673 Gene3D Phosphorylase Kinase; domain 1 404 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1985 Lja-Chr6 47805734 47808573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1985 15 673 Receptor kinase-like Gene Family AT3G42880 48.198 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja6g1985 Pkinase 8.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1985 - - gmx:100790660 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1985 6 47805734 47808573 Lja6g1985 6 47805734 47808573 ECH
Lja4g1499 4 13869796 13872358 Lja6g1985 6 47805734 47808573 PCT