Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1984 ATGGCTTTATCCATTTCCTCCACTGCATTGTCAACTTTTCCAAACACAGAAAAACGTCACAAGGTTTTCCCTGAAAGAACAGCTACATGGTTGCCCAGAAGAATCCATACAAATGCTAAAAAAGGAGTCTCAGATGTATGTGAGCCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCTCCTCCTGAGTGGCTTGATGGCAGTCTTCCTGGTGATTTTGGTTTTGACCCTATTGGATTAGGGTCTGACCCAGAGTTGCTTAAATGGCTTGCTCAGGCAGAGCTAATGCATGCAAGATGGGCAATGCTTGGAGTGTCTGGGATTCTCATTCCAGAACTGCTTGAAAAAATGGGATATGTTGAGAATTATTCCTGGTATGAAGCTGGTACTCAAGAGTACTTTGCAGATCCAACAACCTTGTTCATTGTGCAGTTAGCCTTAATGGGCTGGGTGGAGGGTAGAAGATGGGCTGATTTGGTTAACCCAGGGAGTGTTGACATTGAGCCCAAGCTCCCAAATAGGCCCAACCCAAAGCCTGATGTTGGTTACCCAGGTGGGTTGTGGTTTGACCCCATGATGTGGGGAAGAGGGTCACCAGAGCCAGTGATGGTGTTGAGGACCAAGGAGATCAAGAATGGTAGACTTGCAATGCTTGCTTTTGTTGGCTTCTGGTTCCAAGCTATTTATACTGGACAAGGCCCCATTGAAAACTTGATGGCACACCTTGCAGATCCTGGTCACTGCAACATTTTTTCGGCTTTCACTTCGAGGTAG 780 0.4667 MALSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEKMGYVENYSWYEAGTQEYFADPTTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTSR* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1984 259 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 256 IPR001344 GO:0009765|GO:0016020
Lja6g1984 259 Gene3D Chlorophyll a/b binding protein domain 64 249 - -
Lja6g1984 259 Pfam Chlorophyll A-B binding protein 63 229 IPR022796 -
Lja6g1984 259 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 256 - -
Lja6g1984 259 SUPERFAMILY Chlorophyll a-b binding protein 53 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1984 Lja-Chr6 47803189 47805213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1984 52 259 Chloroplast and Mitochondria Gene Families AT3G61470 68.750 8.64e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1984 K08908 - gmx:100800374 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1984 6 47803189 47805213 Lja6g1984 6 47803189 47805213 ECH