Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1982 ATGTCTAGCTCATCGGAATTCTCTGAATTTTCCGGCAACAAGGCGGCGGCGAAGTCGCCGGAGAAGACCACTTTCTCTCAGACTTGTAGTCTCTTGAGTCAATACATCAAGGAGAAAGGTAGCTTCGGAGATCTTACTCTTGGCATGACATGCAACAACACCGAACAAACTGGGGCACCTGAGACTTCTTGTCAGTCTGCAACAACCATGAACTTGTTTCCTGCCAAGGAAAGCAACATGACACCAAAGAATCTGACTCCTATGAATTTGCTCTCTCCACAAGAGATTCCAACCTTGATCAATAATTCTAGTGCAATTAAGTCTGTGAGCAAAGGGGCTAAAGCTTCACAGTTGACAATCTTTTATGCTGGCCAAGTAATTGTGCTTGATGACTTCCCTGCTGATAAAGCGAGTGAACTCATGTCCTTGGCAACCAAAAGCACCTCCCAAAGCCAGAACAACTCTGTTCAAGAGAACCAGCCTTCATTTGCTCCTAGTCTGATCAGAACATCTGCTGATTCAAGTGCTCCGGTTATTCCTGGTGTGAATATCATCCCTTGTACCGGCACCAACTCTATTCCCGAACACGCTCAGGTGTCATCGAGACCTATTGTTTGCGATCTGCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTGGAGAAGAGAAAGGATAGAATTGCTGCCAAAGCACCATATGAAGTGACAAATCTGATGGGGCATGCTAATAAGCCAGCTGAGTCCATGTCATGGCTTGGGTTTGGTACCAGATGA 774 0.4599 MSSSSEFSEFSGNKAAAKSPEKTTFSQTCSLLSQYIKEKGSFGDLTLGMTCNNTEQTGAPETSCQSATTMNLFPAKESNMTPKNLTPMNLLSPQEIPTLINNSSAIKSVSKGAKASQLTIFYAGQVIVLDDFPADKASELMSLATKSTSQSQNNSVQENQPSFAPSLIRTSADSSAPVIPGVNIIPCTGTNSIPEHAQVSSRPIVCDLPIARKASLHRFLEKRKDRIAAKAPYEVTNLMGHANKPAESMSWLGFGTR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1982 257 PANTHER PROTEIN TIFY 10A 19 254 - -
Lja6g1982 257 Pfam Jas motif 209 233 IPR018467 -
Lja6g1982 257 ProSiteProfiles Tify domain profile. 111 146 IPR010399 -
Lja6g1982 257 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 254 IPR040390 -
Lja6g1982 257 Pfam tify domain 114 144 IPR010399 -
Lja6g1982 257 SMART tify_2 111 146 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1982 Lja-Chr6 47783378 47785815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1982 1 255 Tify Gene Family AT1G19180 42.007 3.99e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja6g1982 tify 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1982 K13464 - gmx:100801449 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1982 6 47783378 47785815 Lja6g1982 6 47783378 47785815 ECH
Lja4g1497 4 13856849 13858701 Lja6g1982 6 47783378 47785815 PCT