Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1978 ATGGTGAAGCCAAATAATGTGGAAAAACCTGCCAGGGAACAACAACGTGATTCCTCGTACCGAGGAGTGCGGAAGAGGAAGTGGGGAAAATTCGTGACGGAAATCAGGTTGCCCAACAGCCGCCAGAGGATATGGTTGGGTTCCTATGACACTGCTCAGAAGGCAGCGCGTGCATTCGACGCAGCCATGTTCTGCTTACGTGGCACTGACGGGTGCTTTAACTTCCCCGACGACCTGCCGGACATTGCCGGCGAGAGGTGCATGACCCCCTCTCATATTAGAGTCGTCGCAACCCGTTTCGCCAATTCGGAGCCCCAGATGGATAATTCAGGTCGGGCCGTTAGAGCCCCTGTGGAATCGGAGGAGATCAGTTTGCTGCCGATGGAGTCACTATCTCCTCCTCTCTCTGAAGTGACAATTGCAACTGATAGTGACGCCACATCCAGCGGTTCGTCGTTCCATGATTTGTTTTCCGTAGCTGAGTCGGTTAATTACGACTCGGATTACTATGCTTTTCTGGGTTTTGATGATTTTAATGGGGATTTTTACATGCCGGAGCTGCCAAGTTTTGACTACACAGAAGAGAACACTGAGGGGTTGATATTTCAGGATTCGTTCTTGTGGAATTTCTAG 633 0.5055 MVKPNNVEKPAREQQRDSSYRGVRKRKWGKFVTEIRLPNSRQRIWLGSYDTAQKAARAFDAAMFCLRGTDGCFNFPDDLPDIAGERCMTPSHIRVVATRFANSEPQMDNSGRAVRAPVESEEISLLPMESLSPPLSEVTIATDSDATSSGSSFHDLFSVAESVNYDSDYYAFLGFDDFNGDFYMPELPSFDYTEENTEGLIFQDSFLWNF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1978 210 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Lja6g1978 210 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Lja6g1978 210 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Lja6g1978 210 MobiDBLite consensus disorder prediction 9 23 - -
Lja6g1978 210 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 4 210 - -
Lja6g1978 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 210 - -
Lja6g1978 210 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Lja6g1978 210 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Lja6g1978 210 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Lja6g1978 210 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Lja6g1978 210 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g1978 210 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1978 Lja-Chr6 47737996 47739361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1978 18 210 AP2-EREBP Transcription Factor Family AT1G19210 44.949 3.36e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g1978 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1978 - - gmx:100813688 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1978 6 47737996 47739361 Lja6g1978 6 47737996 47739361 ECH