Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1977 ATGGCCACCACTCAGCTCACAGCATCATCGATTTCCACGAGGAATGTTGCATCATTCGAAGGGCTTCGACCAATTCAGTTCCCTTGTGCTGGACTTGTCAGAATCGCCAACCCCACACGGAGGTCGTTCCGGGGTTTGCTTGTTAAGGCTGCCACTGTTGTTGCCCCCAAGTTCACTGCTATTAAGCCTCTGGGTGACAGGGTACTGGTAAAAATTAAGGAATCAGAAGAGAAGTCTCAAGGTGGTATTTTGCTTCCCACAACTGCTCAAACTAAACCTCAAGGGGGTGAGGTGGTTGCTGTCGGAGAAGGAAAGACAATTGGGAAGAGCCAAGTGGAAATTAGTGTGACGACAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGTACTGAGGTGGAATTCAATGGTACAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGCATCCTTGAAACTGAAGACATCAAGGATCTTAAACCATTGAATGATAGAGTTCTCATAAAGGTTGCAGTAGCTGAAGAAAAAACTGCAGGCGGTTTGTTACTTACAGAGGCAACCAAGGAGAAACCTTCCATCGGAACAGTGATAGCAGTTGGTCCTGGACCTCTTGGCGAGGAAGGCAAGAGAAAACCTCTGGCCATTGCTCCTGGAAACACAGTTTTGTACTCCAAATATGCAGGGAATGACTTTAAGGGCAAAGATGGTTCTGATTACATTACCTTGAGAAGCTCAGATGTGATGGCTATTCTCTCCTAG 759 0.4585 MATTQLTASSISTRNVASFEGLRPIQFPCAGLVRIANPTRRSFRGLLVKAATVVAPKFTAIKPLGDRVLVKIKESEEKSQGGILLPTTAQTKPQGGEVVAVGEGKTIGKSQVEISVTTGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETEDIKDLKPLNDRVLIKVAVAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLGEEGKRKPLAIAPGNTVLYSKYAGNDFKGKDGSDYITLRSSDVMAILS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1977 252 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 Gene3D GroES chaperonin 154 252 IPR037124 GO:0006457
Lja6g1977 252 Gene3D GroES chaperonin 54 153 IPR037124 GO:0006457
Lja6g1977 252 Hamap Co-chaperonin GroES [groES]. 60 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 PANTHER GROES CHAPERONIN 1 252 - -
Lja6g1977 252 CDD cpn10 61 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 ProSitePatterns Chaperonins cpn10 signature. 159 183 IPR018369 GO:0005524|GO:0006457
Lja6g1977 252 SUPERFAMILY GroES-like 59 152 IPR011032 -
Lja6g1977 252 Pfam Chaperonin 10 Kd subunit 61 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 Pfam Chaperonin 10 Kd subunit 159 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 PRINTS 10kDa chaperonin signature 61 76 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 PRINTS 10kDa chaperonin signature 83 104 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 PRINTS 10kDa chaperonin signature 117 129 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 PRINTS 10kDa chaperonin signature 138 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 SMART Cpn10_2 158 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 SMART Cpn10_2 60 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 ProSitePatterns Chaperonins cpn10 signature. 61 85 IPR018369 GO:0005524|GO:0006457
Lja6g1977 252 SUPERFAMILY GroES-like 158 251 IPR011032 -
Lja6g1977 252 PIRSF Cpn21 1 252 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lja6g1977 252 CDD cpn10 159 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja6g1977 252 Hamap Co-chaperonin GroES [groES]. 158 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1977 Lja-Chr6 47720309 47723031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1977 1 252 Calmodulin-binding Proteins AT5G20720 74.409 1.60e-130 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1977 K04078 - gmx:100814751 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1977 6 47720309 47723031 Lja6g1977 6 47720309 47723031 ECH
Lja4g1490 4 13789532 13791618 Lja6g1977 6 47720309 47723031 PCT