Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1976 ATGAAGGCTCCTCCCAATGGCTACTTGCCTAATTCTGGTGAAGGAGAAAGGAAGAGCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCCGGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACATAGTGAGCAAGTTGCAGCTTCCATGCAAAAGGAGGCTGATTTTATACCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCCTTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCAGTAAATAAATATGACAAGGAAGCAATGTTGGCATCAGACATGGGGCTCAAACAAAACAACCAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTCTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTTCCACCTCTGGATTTTTCAATGCAACCTCCGGCTCAAGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGACAACCAAAAAGGCATCTATTGACTACCGGTTGGAGTGTCTTCATTAGCACGAAAAGGCTGTTTGCCGGAGATTCTGTTCTTTTTGTAAGAGATGAAAAACAGCAACTTCTTTTAGGCATAAAGCGAGCTAATAGACAGCAAACAGCTCTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCTTTTACTATATTTTATAATCCAAGGACCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGTCCATGTACTCTCAAGTTTCTCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGAGTGCGCAGATATATGGGTACAGTCACTGGGATCAGTGACTTGGATCCTGCCCGCTGGAAAAGTTCACAGTGGCGAAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCTATTTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGTCCACCTCCTTTTTTTAGGCCCAAGTACTCCAAGCAACCAGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTGCAAGAGGGCTATGCCTTGGCTTGGGGATGAACTTGGCATGAAGGACGCCTCGAGTTCAATCTTTCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATCAGTTTTCTACCGCACAATCAGGATTTTTACCTCCATCTATGTTGTCATCAAATACACTGCATGGTAACCTTAACACTGATGATCCATCCAAGCTATTAAGCTTTCAAGCCCCTGCTCTCTCTACTCCAACAAGTCTTCAATTTAGCAAACCTAATTTACCAAACCAAGTCAATCAATTGCAACAGTCCCCAACTTCTTGGCCTCAGCAGCAGCAGAAGCTGCAGTCATTGTTGCAAACACCATTAAACCAGGTCCAGCAGCAGCAGAGGCAACAACAGCAGCCTGGGCCACAAAACCTGCCACAGCCACCGCAACAACAACAGCAACCGCATCTGCCTCAACAGAGAGCACAACAAACACAACAACAACAGCAACAGCCGTTTCAACATACGGTTATGAATAATGGGGCAGTTGCTTCTAGCCAGATTCCAAATCAAGGTGTACAGCAACCAGTAACCTATTCTCAGCTTCAGCAACAGCAATTACTCTCAGGAAGTGTACCACCCCAACAAGGTTTCCAATCATCCGGTAAGAATACATTGCTAATGACATCCTTACCACAAGAGTCACAATTTCAGCAACACATAGACCAGCAATCTACTCTCTTACAGAGGCAGCAGCAGCAGCAGCAGCAACAGCAACAGACACAGTTGCAACAATCTCCAATGCAGTTATTACAACAAAGCCTGTTGCACAGGGCACCACAGCAGTCACAAATGACTCAAATGTCACTGCAAAACGCCTCAGAGCAACAACCACAGTTACAGTTACTACAAAAATTGCAACAACAACAACAGCAGCAGCAGCATCAACAACTCCTTTCTACATCTAGCCCAAATATGCAGTCTCAGCTCCTGCAGCAACAAAATGCTCACCAACAAAACCAGCAACTACCACAACTGCCTCTGTCACAGCACCAGCCTCAACAGCTCGGTAACAATGCATTCTCAATGGATAAGTTTCTTAACAACAACTTCTCTTCAGCTCCGATGCAATCACAGCAACTTCCTGGGAACCAATCCCAGAACACACCGAAATCACTGTCTAGAGCACCCTCTACTCTTTCAGATGGAGATGCACCATCATGCTCAACTTCTCCATCTACTAATACCTGTCAGATATCTCCTCCAAATCTTCTGAGAAGAAATCAACAAATAACTGTCACATTAGGGGTGACTTCAGTTGTTGAACCCACCAATAATCTGATGGAGCTGCAGACTAAGTCTGACATGCAGATCAAACATGAACTGCACAGTGCTAAAGGGCCTGACAAGCTAAAATATAAAGGAACAATTGCTGAACAGATGGAGACTTCTTCCGGAACATCTTACTGTATTGATACTGGTAATATCCACCAGAACTTCCAACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATCTACCATTTGCATCTCATCTTGATGGATTAACACCAGATACTTTTCTCTCAAGGGGGTATGACTCTCAAAAAGATCTTCAGAACTTGCTGTCTAATTATGGTGCTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCTATTAGCTCAGAGCTGTTTGGGATGCCAAACATGCCTTTTAAGCCCGGATGCTCAAATGATATTGCCATGAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCCAATCAAACTCAACGAATGCGAACATATACCAAGGTGCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGCTATAGTGGATATGATGAACTCCGGCAGGATTTGGCTCGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGAACTGAATGGAAACTGGTATATGTAGATCATGAAAACGACATTCTTCTTGTCGGTGATGACCCTTGGGAAGAATTTGTGAGCTGTGTCCAGAGCATAAAGATACTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGCCATGTTCCAATCCCCAATCAGGCTTGTAGCGAGACGGAAAATGGCAATGCTTGGAGGGGACAGTATGATGATAACTTCAAGTAG 3336 0.4406 MKAPPNGYLPNSGEGERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNNQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFVRDEKQQLLLGIKRANRQQTALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPSEFVIPLAKYNKSMYSQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPARWKSSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKYSKQPGMPEDESDIENACKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNQFSTAQSGFLPPSMLSSNTLHGNLNTDDPSKLLSFQAPALSTPTSLQFSKPNLPNQVNQLQQSPTSWPQQQQKLQSLLQTPLNQVQQQQRQQQQPGPQNLPQPPQQQQQPHLPQQRAQQTQQQQQQPFQHTVMNNGAVASSQIPNQGVQQPVTYSQLQQQQLLSGSVPPQQGFQSSGKNTLLMTSLPQESQFQQHIDQQSTLLQRQQQQQQQQQQTQLQQSPMQLLQQSLLHRAPQQSQMTQMSLQNASEQQPQLQLLQKLQQQQQQQQHQQLLSTSSPNMQSQLLQQQNAHQQNQQLPQLPLSQHQPQQLGNNAFSMDKFLNNNFSSAPMQSQQLPGNQSQNTPKSLSRAPSTLSDGDAPSCSTSPSTNTCQISPPNLLRRNQQITVTLGVTSVVEPTNNLMELQTKSDMQIKHELHSAKGPDKLKYKGTIAEQMETSSGTSYCIDTGNIHQNFQLPNFCMDGDVQSHPRNNLPFASHLDGLTPDTFLSRGYDSQKDLQNLLSNYGAAPRDIETELSTAAISSELFGMPNMPFKPGCSNDIAMNDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYSGYDELRQDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPIPNQACSETENGNAWRGQYDDNFK* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1976 1111 MobiDBLite consensus disorder prediction 695 723 - -
Lja6g1976 1111 PANTHER AUXIN RESPONSE FACTOR 19 1 1102 - -
Lja6g1976 1111 MobiDBLite consensus disorder prediction 535 554 - -
Lja6g1976 1111 Gene3D - 289 360 - -
Lja6g1976 1111 CDD B3_DNA 125 217 IPR003340 GO:0003677
Lja6g1976 1111 SUPERFAMILY CAD & PB1 domains 1002 1067 - -
Lja6g1976 1111 MobiDBLite consensus disorder prediction 469 554 - -
Lja6g1976 1111 MobiDBLite consensus disorder prediction 469 522 - -
Lja6g1976 1111 MobiDBLite consensus disorder prediction 746 803 - -
Lja6g1976 1111 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lja6g1976 1111 MobiDBLite consensus disorder prediction 658 677 - -
Lja6g1976 1111 MobiDBLite consensus disorder prediction 1092 1111 - -
Lja6g1976 1111 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Lja6g1976 1111 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1102 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja6g1976 1111 Gene3D - 123 227 IPR015300 -
Lja6g1976 1111 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lja6g1976 1111 Pfam AUX/IAA family 986 1075 IPR033389 -
Lja6g1976 1111 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja6g1976 1111 SMART B3_2 126 228 IPR003340 GO:0003677
Lja6g1976 1111 ProSiteProfiles PB1 domain profile. 989 1082 IPR000270 GO:0005515
Lja6g1976 1111 Gene3D - 984 1078 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1976 Lja-Chr6 47713877 47719412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1976 1 489 B3 DNA Binding Superfamily AT1G19220 82.004 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja6g1976 AUX_IAA 2.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1976 K14486 - gmx:100804628 1656.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1976 6 47713877 47719412 Lja6g1976 6 47713877 47719412 ECH
Lja4g1489 4 13780352 13787772 Lja6g1976 6 47713877 47719412 PCT