LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g1975	ATGATGGAGACGAAGAAGAAGATGAAGAAGAGTACACAAGTGGTGCAAAGTAAAGATTTTGAGAAGAAGGGTGTTGCTGGCAATGGTGCTAGGAATGGAAGCTGTGGAGATAACAGTGTTTTTGCTTCTTGTTCGTTCTCAAGCCTTGGCCTTCATTCCAGTTTGTGTGACCAACTTCGTGATAGGTTAGGCTTTGAAGCTCCAACTTTGGTGCAAGCTCAAGCAATTCCTGTCATCCTCTCCGGGCGCCATGCCCTGGTTAATGCGGCCACGGGCACAGGGAAGACTATTGCCTACCTGGCTCCTATCATTCATTACTTGCAGAGTTATGATAACCGAATCCAGCGTTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGAGAGCTATGTTTGCAGGTTTATGAAATTCTTGTGAAGTTACTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAGAATAGATCCAAGGAGAAAGCCAGGCTGCGCAAAGGTATATCAATTCTTATAGCAACTCCTGGGCGCCTTCTAGATCACTTGAAGAAGACATCATCATTCGTATACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAACGAGAACCGGGTGTGATGACCAAGAGAATGCAGTTCCTGGAGCCTCTAAAACTCAAAGACAGAATTTGCTATTGTCAGCCACCTTAAATGAGAAAGTAAACCACCTTGCCAAAATTAGTCTAGAGAATCCGGTGATGATTGGTCTTGATGATAAAAGCATAGAACCAATTTCAACAACTGCAAGCCTTGATCACGCAGAACCTGATGAAGACAGTGAAGAAAAGTATTCCGGTAAAATACCAACAGTTGGTGATTATAAAGTTCCTGTACAGTTGATTCAGAGACACGTGAAAGTGCCTTGTGGTTCACGCCTTCCTGTACTTCTTTCAATTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCGGTGGACTTTCACTATTCACTGTTAAAATCATTCAAATTTTCGTCATATCCACAAATAGAAGAAGGGGACAAACAAATGTTTCTGGGATGCAAAATTTTGCATTTACATGGTAATATGGAACAGGAGAACCGAAGAACAAGTTTCCAGGCCTTTAAAACTGAGAATTCTGCTCTGCTTTTATCGACTGATGTTTCTGCTAGAGGTCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTGTCCAGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGCCTGGGGGAAAAAGGAGAGTCACTATTATTTCTACAACCAATTGAAAGAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATTATTTCCCCCTACATGGACAAAGTAAACACTTAAAGAAATCAGTTTTCATAGACTCGCATCCCTGGGTGCTCTGTCTACAGAAGGCACTTGAATCCTTCATAACATCCAAGCCCAAGCTGGATGAACTTGCCAAGAGGGCATTCTGCTCTTGGGTCCGTGCATACACAGCCTATAAGGGTGATCTGAAAAAAATATTTCTGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGAAAGTCATTCCAAAAGCAAATTAAGAAGAGAAAGAGATATGAGAAGAATAATGGGCTGTCAAATAAGAGAAAAGTTGCGAGGGTGACATAA	1845	0.4146	MMETKKKMKKSTQVVQSKDFEKKGVAGNGARNGSCGDNSVFASCSFSSLGLHSSLCDQLRDRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKHGVSLTEYPLLKVLDYFPLHGQSKHLKKSVFIDSHPWVLCLQKALESFITSKPKLDELAKRAFCSWVRAYTAYKGDLKKIFLIKKLHLGHVAKSFALKQQPSLVGKSFQKQIKKRKRYEKNNGLSNKRKVARVT*	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g1975	614	Gene3D	-	328	610	IPR027417	-
	Lja6g1975	614	SMART	helicmild6	375	458	IPR001650	-
	Lja6g1975	614	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	44	73	IPR014014	GO:0003724
	Lja6g1975	614	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	76	272	IPR014001	-
	Lja6g1975	614	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile.	49	356	IPR014013	GO:0005524
	Lja6g1975	614	Gene3D	-	1	274	IPR027417	-
	Lja6g1975	614	PANTHER	RNA HELICASE	26	612	-	-
	Lja6g1975	614	CDD	DEADc_DDX31	55	273	-	-
	Lja6g1975	614	Pfam	DEAD/DEAH box helicase	70	260	IPR011545	GO:0003676\|GO:0005524
	Lja6g1975	614	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	194	474	IPR027417	-
	Lja6g1975	614	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	39	272	IPR027417	-
	Lja6g1975	614	Pfam	Helicase conserved C-terminal domain	335	458	IPR001650	-
	Lja6g1975	614	CDD	SF2_C_DEAD	317	467	-	-
	Lja6g1975	614	SMART	ultradead3	64	291	IPR014001	-
	Lja6g1975	614	Pfam	Domain of unknown function (DUF4217)	522	582	IPR025313	-
	Lja6g1975	614	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	200	208	IPR000629	-
	Lja6g1975	614	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	332	505	IPR001650	-
	Lja6g1975	614	PANTHER	ATP-DEPENDENT RNA HELICASE DDX31-RELATED	26	612	-	-
	Lja6g1975	614	SMART	DUF4217_3	520	585	IPR025313	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g1975	Lja-Chr6	47684838	47690661	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g1975	45	490	Eukaryotic Initiation Factors Gene Family	AT3G19760	25.055	1.80e-34	133

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja6g1975	6	47684838	47690661	Lja6g1975	6	47684838	47690661	ECH