Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1973 ATGGAATTCAAGTCCCTGTCTCTGCAATTTCTTCTCCTTCTACTTCCTCTTCATGCTCTCGCTTCCAATGCTACACTCAATGGGACTTGTGGTTCTTTCAATACAGACCCTAAAGCACCATGTCCAATTGGCTGGGTTATTGACCCTAATAATAAGACCAGGTGCTTTCTCCATGTTGAGAGTCCTCAATCTTGGAATGACTCAGAGACTTGTTGTGATAAATATGGTGGACATTTAGCATCATTGACATCACTTCAGGAACTACACTTTGCTCAAAGTCTGTGTGGTGAGTCTATAAATAGTTGCTGGATTGGTGGAAGAAGACTCAACTCTACGGGTGGTTTTCAGTGGATGTGGTCTGATAATTCTCAGTGGAATAAGTCCATGTTTCCTTTGGTCAATTGTACTGGAACTGGACTATCTTGTCATGTAAACAGCACATACAATTTATGTACAGTGGTGACTAATAACTCAAAATCTCTCATTAGTGAGAGGTGTGACAATCCTCATGCTTCTCTATGCATACTGGAAATAGATACCAAATGTAAACATATGCACTGCCACAGGGAATACCTTATCATCCTTGCAGTGGTGAGTGCATTGATACTCTCCACAACATTAGCAGTGGTACTTTGGCTTCTTTTATGTAAACGGGGCAAGAAGAGACGACGGTCTAGAAAACTATCTGATCCAGCTTCTCTTCCATCATGGAAAGTCTTTACCAAAGAGGAATTGAGGTCAATTACTAAGAATTTCAGTGAAGGTAACCGTCTTGTCGGGGATACGAAGACTGGTGGTACATACAGTGGGGTCCAACCAGATGGCTCAAAGGTTGCAGTTAAGAGAATAAAGAGGTCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATAAACAGGGTTGCAAGGCTTCGTCATCCAAATCTGGTGACTGTAGTGGGGTGCTGCTATGGTCATGGTGACCGCTACATTGTTTACGAGTTTGTAGCCAATGGACCCTTAGATAAATGGCTGCATCACATACCAAGAGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCGCAAGTTGTGCACCGAGACATACGTGCTAGTAATGTTCTGCTGGATGAGGAGTTCGGAGCACACCTCATGGGTGTCGGTCTGTCCAAGTTTGTGCCATATGAAGCGATGCACGAGAGGACTGTGATGGCAGGTGGAACCTATGGATATCTGGCTCCAGAGTTTGTGTACAGAAACGAGCTCACAACGAAGAGTGATGTTTATAGTTTTGGTGTCCTGCTACTTGAAATAGTGAGTGGACGTAGACCTGCACAGGCAGTTGATTCTGTGGGATGGCAGAGCATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGCTACCATGAACTCCTCGATCCTCATATATCTTCCTCGTCTTCTAGTATCATCCCGGAGGCTAGTACCATCCAGAAGGTGGTTGACCTTGTTTATTCATGCACGCAGCATGTCCCTTCAATGCGCCCTAGAATGTCACATGTTGTTCATCAGCTACAACAGTTTGTCCAGCCACCTACAAAGTGA 1620 0.4444 MEFKSLSLQFLLLLLPLHALASNATLNGTCGSFNTDPKAPCPIGWVIDPNNKTRCFLHVESPQSWNDSETCCDKYGGHLASLTSLQELHFAQSLCGESINSCWIGGRRLNSTGGFQWMWSDNSQWNKSMFPLVNCTGTGLSCHVNSTYNLCTVVTNNSKSLISERCDNPHASLCILEIDTKCKHMHCHREYLIILAVVSALILSTTLAVVLWLLLCKRGKKRRRSRKLSDPASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVQPDGSKVAVKRIKRSSFQRKKEFYSEINRVARLRHPNLVTVVGCCYGHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYHELLDPHISSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFVQPPTK* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1973 539 SUPERFAMILY C-type lectin-like 22 174 IPR016187 -
Lja6g1973 539 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 534 - -
Lja6g1973 539 ProSiteProfiles C-type lectin domain profile. 51 175 IPR001304 -
Lja6g1973 539 ProSitePatterns Tyrosine protein kinases specific active-site signature. 375 387 IPR008266 GO:0004672|GO:0006468
Lja6g1973 539 SMART CLECT_2 41 175 IPR001304 -
Lja6g1973 539 Gene3D - 20 178 IPR016186 -
Lja6g1973 539 Pfam Lectin C-type domain 62 174 IPR001304 -
Lja6g1973 539 CDD CLECT 54 174 - -
Lja6g1973 539 SMART tyrkin_6 258 530 IPR020635 GO:0004713|GO:0006468
Lja6g1973 539 ProSiteProfiles Protein kinase domain profile. 253 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1973 539 PANTHER - 1 534 - -
Lja6g1973 539 SUPERFAMILY Protein kinase-like (PK-like) 226 530 IPR011009 -
Lja6g1973 539 Gene3D Phosphorylase Kinase; domain 1 227 328 - -
Lja6g1973 539 Pfam Protein tyrosine and serine/threonine kinase 272 530 IPR001245 GO:0004672|GO:0006468
Lja6g1973 539 Gene3D Transferase(Phosphotransferase) domain 1 329 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1973 Lja-Chr6 47675416 47680772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1973 72 536 Receptor kinase-like Gene Family AT1G52310 70.894 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Lja6g1973 PK_Tyr_Ser-Thr 6.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1973 - - gmx:100779497 906.36